CK938488

Overview
NameCK938488
Unique NameCK938488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL1_MOUSE (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Mus musculus GN=Uchl1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.697e-25
Identity = 57/145 (39.31%), Postives = 79/145 (54.48%), Query Frame = 1
Query:   10 VYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 444
            VY MKQT+GN+CGTIGL+HAV N   +++F+  S   +F   T  L P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    + F+ +A  K A
Sbjct:   79 VYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQFLSETEKLSPEDRAKCFEKNEAIQAAHDSVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDSLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL1_MACFA (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Macaca fascicularis GN=UCHL1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   10 VYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 444
            VY MKQT+GN+CGTIGL+HAV N   ++ F+  S   +F   T  + P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    + F+ +A  K A
Sbjct:   79 VYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEGTLLQDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL1_HUMAN (Ubiquitin carboxyl-terminal hydrolase isozyme L1 OS=Homo sapiens GN=UCHL1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.781e-25
Identity = 56/145 (38.62%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   10 VYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKKA 444
            VY MKQT+GN+CGTIGL+HAV N   ++ F+  S   +F   T  + P++RA   E ++ ++ AH   A  G     D VN HFI F  VDG LYELDGR   P++HG            KV +   ++    + F+ +A  K A
Sbjct:   79 VYFMKQTIGNSCGTIGLIHAVANNQDKLGFEDGSVLKQFLSETEKMSPEDRAKCFEKNEAIQAAHDAVAQEGQCRVDDKVNFHFILFNNVDGHLYELDGRMPFPVNHGASSEDTLLKDAAKVCREFTEREQGEVRFSAVALCKAA 223          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL_DICDI (Probable ubiquitin carboxyl-terminal hydrolase OS=Dictyostelium discoideum GN=uch1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 58/147 (39.46%), Postives = 86/147 (58.50%), Query Frame = 1
Query:   10 VYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDT---EATDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFSKK 441
            VY MKQ +GNACGTIG++H+V N  + I+F  + FF +F   T +L  +ERA  L  + E+E +H ++A  G +   +  + V  HF+ F  VDG LYELDGRK   I+HG             V++ MI ++P+ + FN++   KK
Sbjct:   92 VYFMKQYIGNACGTIGVIHSVLNNANVIEFNENGFFKQFLDKTTSLSTEERAISLLKNSEIEKSHEISALQGQSNVPQEDEPVVLHFVSFVHVDGHLYELDGRKPFAINHGESSAETLLKDTANVLQKMIDEDPKEIRFNLMGLVKK 238          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL_APLCA (Ubiquitin carboxyl-terminal hydrolase OS=Aplysia californica GN=UCH PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.345e-22
Identity = 54/136 (39.71%), Postives = 75/136 (55.15%), Query Frame = 1
Query:    7 NVYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEA---TDDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPE 405
            ++Y  KQT+GNACGT+ ++HA+ N  + I F A   F  F + T  L+P+ERA  LE D  M  AH   A  GDT+A    + V  HF+     +G LYELDGRK  P+ HG            +V+K  + ++PE
Sbjct:   78 SLYYTKQTIGNACGTVAIVHALANNENVIPFDAAKHFKTFLEKTKPLNPEERAKHLEQDNLMGAAHGDCAQEGDTQAPSQDEHVKSHFVALVHCNGTLYELDGRKEAPVVHGTTSADTFLEDAAEVVKKFMARDPE 213          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UCHL_DROME (Ubiquitin carboxyl-terminal hydrolase OS=Drosophila melanogaster GN=Uch PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.539e-18
Identity = 53/146 (36.30%), Postives = 75/146 (51.37%), Query Frame = 1
Query:    4 KNVYSMKQTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAASAGDTEAT--DDVNDHFICFTCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 435
            ++++ M+Q   NACGT+ L+H+V N   E+        D F + TA+L P+ER   LE D++    H   A  G T A   + V  HFI     +G LYELDGRKS PI HG            KV K  + ++P  + F V+A +
Sbjct:   80 EDLFYMRQFTHNACGTVALIHSVAN-NKEVDIDRGVLKD-FLEKTASLSPEERGRALEKDEKFTADHEALAQEGQTNAANHEKVIHHFIALVNKEGTLYELDGRKSFPIKHGPTSEETFVKDAAKVCKEFMARDPNEVRFTVLALT 223          
BLAST of CK938488 vs. ExPASy Swiss-Prot
Match: UBLH1_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 1 OS=Schizosaccharomyces pombe GN=uch1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 50/145 (34.48%), Postives = 71/145 (48.97%), Query Frame = 1
Query:   25 QTVGNACGTIGLLHAVGNVTSEIKFQADSFFDKFYKSTANLDPQERAAFLENDKEMEVAHSVAA----SAGDTEATDDVNDHFICF----TCVDGELYELDGRKSGPISHGXXXXXXXXXXXXKVIKGMIQKNPESLNFNVIAFS 435
            QT+ NACGTIGLLHAV N     K   + F     ++      +ERA  +E+ KE+E  H+  A        +E   + + HFICF    +  D   YELDGR+ GP+ H              VIK  IQ + +S  F+++A +
Sbjct:   77 QTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAEGSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYELDGRQEGPVQHSEIESDLLNAEVLSVIKNYIQ-SIDSPFFSLVAIT 220          
The following BLAST results are available for this feature:
BLAST of CK938488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UCHL1_MOUSE1.697e-2539.31Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_MACFA3.781e-2538.62Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL1_HUMAN3.781e-2538.62Ubiquitin carboxyl-terminal hydrolase isozyme L1 O... [more]
UCHL_DICDI5.460e-2439.46Probable ubiquitin carboxyl-terminal hydrolase OS=... [more]
UCHL_APLCA1.345e-2239.71Ubiquitin carboxyl-terminal hydrolase OS=Aplysia c... [more]
UCHL_DROME1.539e-1836.30Ubiquitin carboxyl-terminal hydrolase OS=Drosophil... [more]
UBLH1_SCHPO1.032e-1434.48Probable ubiquitin carboxyl-terminal hydrolase 1 O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_C01 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938488 ID=CK938488; Name=CK938488; organism=Citrus sinensis; type=EST; length=729bp
GGGAAGAATGTTTATTCCATGAAGCAAACTGTTGGAAATGCTTGTGGAAC
AATTGGACTTCTTCATGCTGTTGGGAACGTCACTTCGGAAATCAAGTTTC
AAGCTGATTCATTCTTCGATAAATTTTACAAGTCCACAGCGAACTTGGAT
CCACAAGAGCGTGCAGCATTTCTTGAGAATGATAAGGAAATGGAAGTTGC
TCATTCGGTAGCAGCTTCAGCTGGTGACACAGAGGCTACCGATGACGTGA
ATGATCATTTTATCTGCTTCACCTGTGTGGATGGGGAACTTTATGAACTT
GATGGAAGGAAGTCGGGGCCAATATCTCATGGTGCTTCGTCTCCAAGCAG
CTTATTGTTGGATGCAGCTAAAGTGATAAAGGGCATGATCCAGAAAAATC
CTGAATCACTGAACTTCAATGTAATTGCCTTTTCGAAGAAAGCTTGAGGT
GCATTTTAATGTTGAGAATCTGAGCTTATTAAGTTCCTGCAAATGATAAA
GCTTCTTACTGCGGTTTTCAGTTTGTGCACATCCACATATGCTGCAGACA
AACTAGTTCAGTGATGGTTGTAGGTCGACTTAGGTGGCTTTACTTTCAGA
TGGTACAGCATGTTAATTCTGGTTGCTATGTTTCAGTTTTAGAGCAGATT
CATTTTACACCTTGGGAGTGCCAGCATGACTCTTAGCCCTACAATGCAAG
TTATGCTACATTTCCTGCTGATGTTAAAT
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