CK938478

Overview
NameCK938478
Unique NameCK938478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK938478 vs. ExPASy Swiss-Prot
Match: SBP2_MOUSE (Selenium-binding protein 2 OS=Mus musculus GN=Selenbp2 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 4.741e-23
Identity = 47/71 (66.20%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    7 TNSLFSAWDCQFYPEPKEKGSHMLQIDVNSEKGGMAINPNFFVDFEAEPDGPALAHEMRYPGGDCTSDIWI 219
            T SL+S WD QFYP+   +GS MLQ+DV++  GG+ +NPNF VDF  EP GPALAHE+RYPGGDC+SDIWI
Sbjct:  402 TTSLYSDWDKQFYPDLIREGSVMLQVDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
The following BLAST results are available for this feature:
BLAST of CK938478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SBP2_MOUSE4.741e-2366.20Selenium-binding protein 2 OS=Mus musculus GN=Sele... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004442_D02 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IIIF_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938478 ID=CK938478; Name=CK938478; organism=Citrus sinensis; type=EST; length=451bp
GGGGTTACCAACTCGCTCTTTAGTGCATGGGATTGTCAATTTTATCCTGA
ACCCAAGGAGAAAGGATCCCACATGCTACAGATTGATGTCAACTCCGAGA
AGGGTGGTATGGCTATCAATCCAAACTTTTTTGTGGACTTTGAAGCTGAA
CCTGATGGTCCTGCCCTAGCTCATGAGATGAGGTATCCTGGTGGTGATTG
CACTTCAGATATATGGATTTAACCATCTTAATCTATTCTGGCAATAAACG
GTGTCCATTATGTCCAGATAGGATACCGCTTTGATTGATGGGGTGATTAC
GTTTGTATGTGGAAGTCAGTGTCCGTTCTGGTTCTGGAATAGCCAGTTTA
AGATAATGGTTTGATTTATGCAGTAAATAAACTTTTTACCTTGTATAACT
GCTCCTGATGAATGTTTTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
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