EY665940

Overview
NameEY665940
Unique NameEY665940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 4.244e-75
Identity = 137/178 (76.97%), Postives = 151/178 (84.83%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFY 603
            DNPT VQLPGMY  +EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANA+AI +G+F+
Sbjct:  263 DNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 7.240e-75
Identity = 136/177 (76.84%), Postives = 151/177 (85.31%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNF 600
            DNPT VQLPGMY  +EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANA+AI +GNF
Sbjct:  263 DNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.004e-74
Identity = 134/175 (76.57%), Postives = 150/175 (85.71%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSG 594
            DNPT VQLPGMY  +EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W            L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ANA+AI +G
Sbjct:  258 DNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 2.575e-72
Identity = 134/178 (75.28%), Postives = 149/178 (83.71%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFY 603
            DNPT VQLPGMY  E+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG AN +AI+SG+F+
Sbjct:  263 DNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 8.023e-66
Identity = 122/154 (79.22%), Postives = 131/154 (85.06%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 531
            DNPT VQLPGMY  EENPRVPIIVTGNDFSTLYAPLIRDGRM+KFYWAPTREDRIG+C GIFR D V  +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  256 DNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 3.496e-53
Identity = 106/164 (64.63%), Postives = 120/164 (73.17%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAAL 561
            DNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR W            LVN+++      +  M +  L++YG  +V EQENVKRVQLAD YLS A L
Sbjct:  232 DNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV-AMPKVSMDLNVLIKYGKSLVDEQENVKRVQLADAYLSGAEL 394          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.609e-44
Identity = 88/160 (55.00%), Postives = 114/160 (71.25%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENP--RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 543
            DNPT VQLPG Y  + NP  RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R++            +VNS EA P F++P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  132 DNPTDVQLPGSY--DSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.127e-43
Identity = 90/190 (47.37%), Postives = 120/190 (63.16%), Query Frame = 1
Query:   70 DNPTCVQLPGMYY*EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANANAIQSGNFYGKAAQQNECSSS 639
            DNPT VQLPG Y      RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R++            +VNS E  P F++P  T+  L+E  N +V EQ+ ++  QL D+Y           N +  G  Y  A+   E ++S
Sbjct:  132 DNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY-----------NRLNRGRSYQPASPVAEIATS 310          
BLAST of EY665940 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.033e-13
Identity = 45/73 (61.64%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  124 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 342
            RVPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   95 RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
The following BLAST results are available for this feature:
BLAST of EY665940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA1_TOBAC4.244e-7576.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC7.240e-7576.84Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN8.004e-7476.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.575e-7275.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA8.023e-6679.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE3.496e-5364.63Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.609e-4455.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.127e-4347.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY6.033e-1361.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-007-F02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665940 ID=EY665940; Name=EY665940; organism=Citrus sinensis; type=EST; length=892bp
CCTGGCGGGTACGGGCCGGGAATTCCGGGTCGACCCCGCGTCCGAACGCC
ACACTCATGAACCTCTTTTGATAACCCAACTTGTGTCCAACTCCCTGGTA
TGTACTATTAGGAGGAGAACCCCCGTGTCCCAATCATAGTCACCGGTAAT
GACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTATGGAGAA
ATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAAGGGTA
TCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTTGAC
ACCTTCCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAGAGT
CTATGATGATGAGGTGAGGAATTGGATCTCTGGTATTGGTGTTGGAAGCA
TTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAA
CCAAGGATGACAATGGAGAAGCTGCTCGAGTACGGAAACATGATTGTGCA
AGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGTG
AGGCCGCTCTTGGTGAAGCTAATGCAAATGCTATTCAGAGTGGAAATTTC
TATGGCAAAGCAGCCCAGCAAAATGAATGTTCCAGTTCCCTGAACGATGT
ACTGGATCTAACGGCACAAAATTTTGATCCACCTGCAAGAAGTGGATGAG
GGAAGTTCGCAATAACCGCCTTTAGCGCCTTGTTTTCTAAGGGTTTCAAA
ACCGGCCCTCTTTTCCTTCTAGGATGCGGAAAAATCACAAACAATTTGTT
TGCATTTTCCTTTCCTTTGTCAACTAAGAAAACAATCCTTCCAACTTTTG
GGTTAAACTCTCACGTTTTTTTTATTCGCCTTTAAAACAAAT
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