CK938426

Overview
NameCK938426
Unique NameCK938426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A2C_HUMAN (Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC PE=1 SV=4)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 471
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +  +K+
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKS 128          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A2C_BOVIN (Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 65/105 (61.90%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 471
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +  +K+
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKS 128          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A3_CHICK (Histone H2A-III OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.383e-29
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 471
            LQFPVGR+ R L+ G YAERVGAGAP                  GN ARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +  +KA
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNPARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHKAKA 128          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A_EMENI (Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 64/102 (62.75%), Postives = 73/102 (71.57%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSG 462
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNIH  LLPKKT  +G
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTPKAG 126          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A_COCIM (Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 65/108 (60.19%), Postives = 74/108 (68.52%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADE 480
            L FPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGVMP IH  LLPKKT  +G   + E
Sbjct:   25 LAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVMPYIHQNLLPKKTPKTGKNPSQE 132          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 65/98 (66.33%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 450
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A2B_HUMAN (Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 65/98 (66.33%), Postives = 72/98 (73.47%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 450
            LQFPVGR+ R L+ G YAERVGAGAP                  GNAARDNKKTRI+PRH+QLAVRNDEEL+KLLG VTIA GGV+PNI  +LLPKKT
Sbjct:   24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A1A_HUMAN (Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKA 471
            LQFPVGRI R L+ G YAER+GAGAP                  GNA+RDNKKTRI+PRH+QLA+RNDEEL+KLLG VTIA GGV+PNI  +LLPKKT +   KA
Sbjct:   24 LQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTESHHHKA 128          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 63/110 (57.27%), Postives = 76/110 (69.09%), Query Frame = 1
Query:  157 LQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGTSGSKAADEDS 486
            LQFPVGRI R+LK G+YA+ VG GAP                  GNAARDNKKTRI+PRH+ LA+RNDEEL KLLG VTIA+GGV+PNI+ +LLPKKT    S    +++
Sbjct:   37 LQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKTAEKASSGGSKEA 146          
BLAST of CK938426 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 69/123 (56.10%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   85 MAGRGKTLXXXXXXXXXXXXXXXXLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXXGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTG 453
            M+GRGK                  LQFPVGR+ R L+ G YA+RVGAGAP                  GNAARDNKKTRI PRH+QLAVRNDEEL+KLL  VTIA GGV+PNI  +LLPKKTG
Sbjct:    1 MSGRGKGGKAKTGGKAKSRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKTG 123          
The following BLAST results are available for this feature:
BLAST of CK938426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
H2A2C_HUMAN1.825e-2961.90Histone H2A type 2-C OS=Homo sapiens GN=HIST2H2AC ... [more]
H2A2C_BOVIN1.825e-2961.90Histone H2A type 2-C OS=Bos taurus GN=HIST2H2AC PE... [more]
H2A3_CHICK2.383e-2961.90Histone H2A-III OS=Gallus gallus PE=1 SV=2[more]
H2A_EMENI3.113e-2962.75Histone H2A OS=Emericella nidulans GN=htaA PE=3 SV... [more]
H2A_COCIM3.113e-2960.19Histone H2A OS=Coccidioides immitis GN=HTA1 PE=3 S... [more]
H2A2B_MOUSE3.113e-2966.33Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]
H2A2B_HUMAN3.113e-2966.33Histone H2A type 2-B OS=Homo sapiens GN=HIST2H2AB ... [more]
H2A1A_HUMAN3.113e-2961.90Histone H2A type 1-A OS=Homo sapiens GN=HIST1H2AA ... [more]
H2A_MAIZE4.066e-2957.27Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A_CAEEL4.066e-2956.10Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_A05 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938426 ID=CK938426; Name=CK938426; organism=Citrus sinensis; type=EST; length=702bp
GGGGAAAACACGCCAAGCCAAGCCAAGTCTCAACCTTTTGCTCTTTCCAT
TTTCCTTTCTTCGTTAAGAGCTTATTCACTTGAGATGGCGGGTCGGGGCA
AGACTCTCGGGTCCGGGGCGGCGAAGAAGGCCACCTCACGTAGCAGCAAA
GCGGGGCTTCAATTTCCCGTCGGTCGTATTGCCAGGTTCCTGAAAGCCGG
GAAATATGCTGAACGGGTCGGTGCCGGAGCCCCGGTTTATCTCGCCGCCG
TCCTTGAATATCTCGCCGCTGAGGTTTTGGAATTAGCTGGAAATGCTGCA
AGGGACAACAAGAAAACACGAATTGTCCCTCGCCACATCCAATTGGCTGT
CAGGAATGATGAGGAGCTCAGCAAGCTTCTTGGGGATGTTACCATTGCTA
ACGGTGGTGTGATGCCCAACATCCACAACCTTCTCCTTCCCAAGAAGACT
GGGACTTCAGGGTCCAAGGCTGCTGATGAAGACAGTTAAATTCTCATCAC
TAGAAGAGTCAAAGTGATGATCAACACTCTTTGTGTTAATTGTGCTATGT
GACATTTGCCTTTTTAGTGTTTGTTTAGTTAGTTTGTTGTTTTTGTGGTT
GTAGTTAGGATTTCAAATAGCTATGTTTGTGTATAATTTCTCTCAGTTGC
TTAATAGAAGAAGAATTGCTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA
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