CX675489 | Citrus Genome Database

Overview


Name	CX675489
Unique Name	CX675489
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	569

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CKD18_RAT (Cell division protein kinase 18 OS=Rattus norvegicus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.024e-53
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YS P+D+W VGCI  EM   +PLFPG++  +EL  I
Sbjct:  240 HRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLI 330

HSP 2 Score: 110.923 bits (276), Expect = 1.024e-53
Identity = 52/95 (54.74%), Postives = 74/95 (77.89%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            +ALK+IRLE E EG P TAIRE+SLLK+++H NIV L D++H+++ L LVFEYLD DLK+++D C +  N    +K F++Q+LRG+AYCH  ++L
Sbjct:  147 VALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNLMN-MHNVKIFMFQLLRGLAYCHRRKIL 239

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDK18_MOUSE (Cell division protein kinase 18 OS=Mus musculus GN=Cdk18 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.024e-53
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YS P+D+W VGCI  EM   +PLFPG++  +EL  I
Sbjct:  240 HRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGKPLFPGSTVKEELHLI 330

HSP 2 Score: 110.923 bits (276), Expect = 1.024e-53
Identity = 52/95 (54.74%), Postives = 74/95 (77.89%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            +ALK+IRLE E EG P TAIRE+SLLK+++H NIV L D++H+++ L LVFEYLD DLK+++D C +  N    +K F++Q+LRG+AYCH  ++L
Sbjct:  147 VALKEIRLEHE-EGAPCTAIREVSLLKDLKHANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNLMN-MHNVKIFMFQLLRGLAYCHHRKIL 239

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: PHO85_ASHGO (Negative regulator of the PHO system OS=Ashbya gossypii GN=PHO85 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.340e-53
Identity = 56/89 (62.92%), Postives = 70/89 (78.65%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDEL 559
            HRDLKPQN LI+ +   LKL DFGLARAFGIPV TF+ EVVTLWYRAP++L+GSR Y   +D+WS GCI AEM+  + LFPG ++ ++L
Sbjct:  133 HRDLKPQNLLINNK-GQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYCTSIDIWSCGCILAEMIMGKALFPGTNDDEQL 220

HSP 2 Score: 108.612 bits (270), Expect = 1.340e-53
Identity = 57/100 (57.00%), Postives = 77/100 (77.00%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPR-----LIKTFLYQILRGIAYCHSHRVL 293
            +ALK+++L+ E EG PSTAIREISL+KE++H NIVRL DV+H+E KL LVFE++D DLKK MDS  D    PR     L+K F +Q+L+G+A+CH +R+L
Sbjct:   35 VALKEVKLDSE-EGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFEFMDNDLKKFMDSRLD-REMPRGLELSLVKYFQWQLLQGVAFCHENRIL 132

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC28_ENCCU (Probable cell division control protein 28 homolog OS=Encephalitozoon cuniculi GN=CDC28 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.340e-53
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN L+D + N +KLADFGL RA GIP+RT+T EVVTLWYR PE+LLG ++Y A VDVWS  CI AE+V  RP FPG+SEID+LF+I
Sbjct:  128 HRDLKPQNILVDPKEN-IKLADFGLGRAAGIPLRTYTTEVVTLWYRPPELLLGCKYYDASVDVWSAACIMAEVVLMRPFFPGDSEIDQLFRI 218

HSP 2 Score: 96.6709 bits (239), Expect = 1.340e-53
Identity = 44/96 (45.83%), Postives = 66/96 (68.75%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFAN--DPRLIKTFLYQILRGIAYCHSHRV 290
            +ALKKIRLE E+EG+P+T IREI LLK ++H  IV L DV+++  K+YLVFEY++LDL++++D   D     +   ++    Q+L  + YCHS  +
Sbjct:   31 VALKKIRLENENEGIPATTIREILLLKNLKHSTIVELSDVIYNNNKMYLVFEYVELDLRRYLDRMSDEGRLVEEGFVRKMSQQLLTAMEYCHSRNI 126

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDK18_PONAB (Cell division protein kinase 18 OS=Pongo abelii GN=CDK18 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.852e-53
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YS P+D+W VGCI  EM   RPLFPG++  +EL  I
Sbjct:  261 HRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLFPGSTVKEELHLI 351

HSP 2 Score: 108.227 bits (269), Expect = 3.852e-53
Identity = 51/95 (53.68%), Postives = 73/95 (76.84%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            +ALK+IRLE E EG P TAIRE+SLLK ++H NIV L D++H+++ L LVFEYLD DLK+++D C +  +    +K F++Q+LRG+AYCH  ++L
Sbjct:  168 VALKEIRLEHE-EGAPCTAIREVSLLKNLKHANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNLMS-MHNVKIFMFQLLRGLAYCHHRKIL 260

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDK18_HUMAN (Cell division protein kinase 18 OS=Homo sapiens GN=CDK18 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 3.852e-53
Identity = 57/92 (61.96%), Postives = 70/92 (76.09%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN LI+ R   LKLADFGLARA  +P +T+++EVVTLWYR P++LLGS  YS P+D+W VGCI  EM   RPLFPG++  +EL  I
Sbjct:  261 HRDLKPQNLLINER-GELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCIHYEMATGRPLFPGSTVKEELHLI 351

HSP 2 Score: 108.227 bits (269), Expect = 3.852e-53
Identity = 51/95 (53.68%), Postives = 73/95 (76.84%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKKLYLVFEYLDLDLKKHMDSCPDFANDPRLIKTFLYQILRGIAYCHSHRVL 293
            +ALK+IRLE E EG P TAIRE+SLLK ++H NIV L D++H+++ L LVFEYLD DLK+++D C +  +    +K F++Q+LRG+AYCH  ++L
Sbjct:  168 VALKEIRLEHE-EGAPCTAIREVSLLKNLKHANIVTLHDLIHTDRSLTLVFEYLDSDLKQYLDHCGNLMS-MHNVKIFMFQLLRGLAYCHHRKIL 260

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CKB11_ORYSJ (Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp. japonica GN=CDKB1-1 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.575e-53
Identity = 60/92 (65.22%), Postives = 76/92 (82.61%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN L+D+    LK+AD GL RAF +P++++THE+VTLWYRAPE+LLGS HYS  VD+WSVGCIFAEMV ++ LFPG+SE+ +L  I
Sbjct:  134 HRDLKPQNLLVDKEKGILKIADLGLGRAFTVPMKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVRRQALFPGDSELQQLLHI 225

HSP 2 Score: 88.9669 bits (219), Expect = 6.575e-53
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 3

Query:    3 ETIALKKIRLEQEDEGVPSTAIREISLLKEM-QHGNIVRLQDVVHSEKK----LYLVFEYLDLDLKKHMDSCPDFANDPR-----LIKTFLYQILRGIAYCHSHRVL 293
            + +ALKK RLE ++EG+P TA+REIS+L+ + Q   +VRL  V  + K     LYLVFE+LD DLKK +D+     N PR     +IK+FLYQ+ +G+A+CH H VL
Sbjct:   28 QLVALKKTRLEMDEEGIPPTALREISILRLLSQSLYVVRLLSVEQATKNGKPVLYLVFEFLDTDLKKFVDAYRKGPN-PRPLPTNVIKSFLYQLCKGVAHCHGHGVL 133

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CKB12_ARATH (Cyclin-dependent kinase B1-2 OS=Arabidopsis thaliana GN=CDKB1-2 PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 3.225e-52
Identity = 59/92 (64.13%), Postives = 75/92 (81.52%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN L+D+    LK+AD GL+RAF +P++ +THE+VTLWYRAPE+LLGS HYS  VD+WSVGCIFAEM+ ++ LFPG+SE  +L  I
Sbjct:  142 HRDLKPQNLLLDKDKGILKIADLGLSRAFTVPLKAYTHEIVTLWYRAPEVLLGSTHYSTAVDIWSVGCIFAEMIRRQALFPGDSEFQQLLHI 233

HSP 2 Score: 88.5817 bits (218), Expect = 3.225e-52
Identity = 54/112 (48.21%), Postives = 72/112 (64.29%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEM-QHGNIVRL-----------QDVVHSEK-KLYLVFEYLDLDLKKHMDSCPDFAN----DPRLIKTFLYQILRGIAYCHSHRVL 293
            +ALKK RLE ++EG+P TA+REISLL+ + Q   IVRL             V HS K  LYLVFEYLD DLKK +DS    +N    +  L++ F++Q+ +G+A+CHSH VL
Sbjct:   30 VALKKTRLEMDEEGIPPTALREISLLQMLSQSIYIVRLLCVEHVIQSKDSTVSHSPKSNLYLVFEYLDTDLKKFIDSHRKGSNPRPLEASLVQRFMFQLFKGVAHCHSHGVL 141

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CDC2D_ANTMA (Cell division control protein 2 homolog D OS=Antirrhinum majus GN=CDC2D PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.214e-51
Identity = 58/92 (63.04%), Postives = 76/92 (82.61%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKP N L+DR+T  LK+AD GLARA+ +P++ +THE++TLWYRAPE+LLG+ HYS  VD+WSV CIFAE+V Q+ LFPG+SE+ +L  I
Sbjct:  143 HRDLKPHNLLMDRKTMMLKIADLGLARAYTLPIKKYTHEILTLWYRAPEVLLGATHYSPAVDMWSVACIFAELVTQKALFPGDSELQQLLHI 234

HSP 2 Score: 88.5817 bits (218), Expect = 1.214e-51
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEMQHG-NIVRLQDVVHSEKK-----LYLVFEYLDLDLKKHMDSCPDFAND--PRLIKTFLYQILRGIAYCHSHRVL 293
            +ALKK RL +++EGVP T +RE+SLL+ +    ++VRL DV   + K     LYLVFEY+D DLKK++ S         P  +K+ +YQ+ +G+A+CH H VL
Sbjct:   40 VALKKTRLHEDEEGVPPTTLREVSLLRMLSRDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKYIRSFKQTGESIAPMNVKSLMYQLCKGVAFCHGHGVL 142

[Close]

BLAST of CX675489 vs. ExPASy Swiss-Prot
Match: CKB11_ARATH (Cyclin-dependent kinase B1-1 OS=Arabidopsis thaliana GN=CDKB1-1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 7.762e-51
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = 2

Query:  293 HRDLKPQNWLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSAPVDVWSVGCIFAEMVNQRPLFPGNSEIDELFKI 568
            HRDLKPQN L+ +    LK+AD GL RAF +P++++THE+VTLWYRAPE+LLGS HYS  VD+WSVGCIFAEMV ++ LFPG+SE  +L  I
Sbjct:  140 HRDLKPQNLLLVKDKELLKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDMWSVGCIFAEMVRRQALFPGDSEFQQLLHI 231

HSP 2 Score: 88.1965 bits (217), Expect = 7.762e-51
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 3

Query:    9 IALKKIRLEQEDEGVPSTAIREISLLKEMQHG-NIVRLQDVVH----------SEKKLYLVFEYLDLDLKKHMDSCPDFAN----DPRLIKTFLYQILRGIAYCHSHRVL 293
            +ALKK RLE ++EG+P TA+REISLL+ +     +VRL  V H          ++  LYLVFEYLD DLKK +DS     N    +P LI+  ++Q+ +G+A+CHSH VL
Sbjct:   30 VALKKTRLEMDEEGIPPTALREISLLQMLSTSIYVVRLLCVEHVHQPSTKSQSTKSNLYLVFEYLDTDLKKFIDSYRKGPNPKPLEPFLIQKLMFQLCKGVAHCHSHGVL 139

The following BLAST results are available for this feature:

BLAST of CX675489 vs. ExPASy Swiss-Prot

BLAST of CX675489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
CKD18_RAT	1.024e-53	60.87	Cell division protein kinase 18 OS=Rattus norvegic...	[more]
CDK18_MOUSE	1.024e-53	60.87	Cell division protein kinase 18 OS=Mus musculus GN...	[more]
PHO85_ASHGO	1.340e-53	62.92	Negative regulator of the PHO system OS=Ashbya gos...	[more]
CDC28_ENCCU	1.340e-53	68.48	Probable cell division control protein 28 homolog ...	[more]
CDK18_PONAB	3.852e-53	61.96	Cell division protein kinase 18 OS=Pongo abelii GN...	[more]
CDK18_HUMAN	3.852e-53	61.96	Cell division protein kinase 18 OS=Homo sapiens GN...	[more]
CKB11_ORYSJ	6.575e-53	65.22	Cyclin-dependent kinase B1-1 OS=Oryza sativa subsp...	[more]
CKB12_ARATH	3.225e-52	64.13	Cyclin-dependent kinase B1-2 OS=Arabidopsis thalia...	[more]
CDC2D_ANTMA	1.214e-51	63.04	Cell division control protein 2 homolog D OS=Antir...	[more]
CKB11_ARATH	7.762e-51	64.13	Cyclin-dependent kinase B1-1 OS=Arabidopsis thalia...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS08_62E12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E12-J24-1-5.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX675489 ID=CX675489; Name=CX675489; organism=Citrus sinensis; type=EST; length=569bp
ATGAGACAATAGCATTGAAGAAGATCCGCCTTGAGCAGGAAGATGAAGGT
GTGCCTAGCACCGCAATTAGAGAAATTTCCCTCTTGAAAGAAATGCAGCA
TGGGAACATTGTTAGGTTGCAAGATGTAGTGCATAGCGAGAAGAAACTTT
ATCTGGTTTTCGAGTATTTGGACTTGGATTTGAAGAAGCACATGGATTCT
TGCCCAGATTTTGCTAATGATCCGCGTCTGATAAAAACATTCCTTTATCA
AATTCTACGTGGCATTGCCTACTGCCATTCTCACCGGGTTCTCATCGAGA
TTTGAAACCACAAAATTGGCTGATAGATCGTCGTACGAATGCACTAAAGC
TAGCAGATTTTGGACTGGCCAGGGCTTTTGGTATTCCTGTTAGGACATTT
ACACATGAGGTGGTGACATTGTGGTACAGAGCACCTGAAATATTACTAGG
ATCTCGCCATTACTCTGCTCCGGTTGATGTGTGGTCGGTGGGATGTATAT
TTGCTGAGATGGTGAACCAGCGGCCATTGTTTCCAGGAAACTCTGAGATT
GATGAGTTATTCAAGATCT