CK938395

Overview
NameCK938395
Unique NameCK938395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_CLOB1 (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=atpA PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.237e-32
Identity = 73/146 (50.00%), Postives = 96/146 (65.75%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 437
            GGD S+PVT ATL IV+VFWGLD +LA R+HFP++NWL SYS Y   +  +  E    D+  +R KA  +LQ E  L EIV+LVG DAL+E D++ LE AK LREDYL QNAF   D +    K   M++ ++ FY+ A +A+  G
Sbjct:  393 GGDLSEPVTQATLRIVKVFWGLDAQLAYRRHFPAINWLNSYSLYIEKISPWMDENVASDWTALRIKAMSLLQEEASLEEIVRLVGIDALSEKDRLKLEVAKSLREDYLQQNAFHEVDTYASLGKQYKMLKLVLFFYDEAQRALNAG 538          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METVS (V-type ATP synthase alpha chain OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=atpA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 75/168 (44.64%), Postives = 110/168 (65.48%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFY 503
            GGDFS+PVTS TL IV+VFW LD  LA+R+HFP++NWL SYS Y   +  ++++    D+  +R +A  +LQ+E +L EIVQLVG DAL + +++ LE A++LRED+L Q+A+   D +C   K   M++ I+ FY  A  AV KGA  D  K++   +K  +  + Y
Sbjct:  394 GGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLTSYSLYINDIAGWWKKNTGEDWRVLRDEAMGLLQKEAELQEIVQLVGPDALPDRERVILEIARILREDFLQQDAYHEVDSYCSPKKQYNMLKVIMTFYKKALDAVAKGA--DPAKLSAVSVKGDIARMKY 559          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_CLOTH (V-type ATP synthase alpha chain OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.599e-32
Identity = 70/149 (46.98%), Postives = 95/149 (63.76%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGM 446
            GGD S+PVT ATL I++VFWGLD  LA R+HFP++NWL SYS Y   +  +  E    D+  +R+    +LQ E +L EIV+LVG DAL+  D++TLE AK +REDYL QNAF   D +    K   M++ I+ FY    +A+E G  +
Sbjct:  394 GGDLSEPVTQATLRIIKVFWGLDSSLAYRRHFPAINWLQSYSLYLDIIGKWISENISRDWETLRSDTMRILQEEAELEEIVRLVGVDALSPSDRLTLEAAKSIREDYLHQNAFHEVDTYTSLNKQYRMLKLILGFYYSGKKALEAGVSI 542          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_ARCFU (V-type ATP synthase alpha chain OS=Archaeoglobus fulgidus GN=atpA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.701e-32
Identity = 82/202 (40.59%), Postives = 116/202 (57.43%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG------AGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 587
            GGDFS+PVT  TL IV+VFW LD KLA R+HFP++NWL SYS Y   L+ ++ E    ++  +R  A EVLQ E +L EIVQLVG DAL E  ++ LE A+++RE YL Q A+ P D +C   K   M++ I    +   QA+E G      AG++G +                    KFE+  + +PA+ A  +K+ ++L
Sbjct:  394 GGDFSEPVTQNTLRIVKVFWALDAKLAARRHFPAINWLQSYSLYVDTLKDWFAENVSEEWNELRRWAMEVLQEEANLQEIVQLVGSDALPESQRVLLEVARIIREVYLIQYAYHPVDTYCSVQKQYDMLKAIKQINDWFYQALEAGKTIDEIAGVEGLE---------------EFARAKFEE--DYKPAMEAALEKIRKNL 578          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_STRPZ (V-type ATP synthase alpha chain OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=atpA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 72/147 (48.98%), Postives = 98/147 (66.67%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 440
            GGD S+PVT  TL IV+VFWGLD  LAQR+HFP++NWL SYS Y   + S+ ++    ++ N  T+A  +LQRE  L EIV+LVG D+L+E D++ +  A+ +REDYL QNAF   D F  F K   M+ NI+ F   A++A+  GA
Sbjct:  395 GGDISEPVTQNTLRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYQDDVGSYIDRKQQSNWSNKVTRAMAILQREASLEEIVRLVGLDSLSEQDRLIMAVARQIREDYLQQNAFDSVDTFTSFPKQEAMLTNILTFNEEASKALSLGA 541          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_NATPD (V-type ATP synthase alpha chain OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=atpA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.139e-32
Identity = 72/150 (48.00%), Postives = 98/150 (65.33%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 449
            GGDFS+PVT  TL IV+ FW LD  LA+R+HFPS+NW  SYS Y   L+ ++ E    +F  +R  A +VL  ED+L EIVQLVGKDAL E  ++TLE A+ +RE +L QNAF   D +C   K+  M+  I HF + A +A++ G  ++
Sbjct:  397 GGDFSEPVTQNTLRIVKCFWALDADLAERRHFPSINWNESYSLYKEQLDPWWRENVHEEFPEVRQWAVDVLDEEDELQEIVQLVGKDALPEDQQLTLEVARYIREAWLQQNAFHDVDTYCEPEKTYQMLTAIQHFNDEAFEALDAGVPVE 546          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_THEVO (V-type ATP synthase alpha chain OS=Thermoplasma volcanium GN=atpA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.018e-32
Identity = 65/150 (43.33%), Postives = 98/150 (65.33%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 449
            GGD S+PV+  TL + +VFW LD  LA R+HFPS+NWL SYS Y+  L  +Y E    D+ ++R++A ++LQRE +L E+ QLVG DA+ E +K  L+ A+++RED+L Q+AF   D +C   K   M++ I+   +  + A++ G  MD
Sbjct:  577 GGDISEPVSQNTLRVTRVFWALDASLANRRHFPSINWLNSYSLYTEDLRHWYDENVAKDWGSLRSQAMDILQRESELQEVAQLVGYDAMPEKEKSILDVARIIREDFLQQSAFDEIDSYCSLRKQYLMLKAIMELNSYQSMAIDHGVTMD 726          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA3_METHJ (V-type ATP synthase alpha chain 3 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpA3 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.018e-32
Identity = 68/146 (46.58%), Postives = 99/146 (67.81%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 437
            GGDFS+PVT  TL IV+VFW LD  LA ++HFP++NWL+SYS YS     ++E+   P+FI ++ +  E+LQRE++L EI++LVG + L E D++ L  A++LRE YL Q AF  +D F    K   M++ I  F++ A +A+E G
Sbjct:  396 GGDFSEPVTQNTLRIVKVFWALDADLAYQRHFPAINWLMSYSLYSPIAGIWWEEHIGPEFIRMKQEMMEILQRENELEEIIRLVGPETLPESDRLLLLKAEILRESYLMQYAFDEFDTFTGPKKQYRMLKAIFTFFSQAERALETG 541          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_THEP3 (V-type ATP synthase alpha chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=atpA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.047e-31
Identity = 69/146 (47.26%), Postives = 97/146 (66.44%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 437
            GGD S+PVT ATL +V+VFW LD +LA  +HFP++NWL SYS YS  +E +  +    D+  +R++A  +LQ E  L EIV+LVG DAL+  D++ LE A+ +RED+L QNAF   D +    K   M++ I+ FY  A +A+EKG
Sbjct:  394 GGDLSEPVTQATLRVVKVFWALDSELAYARHFPAINWLTSYSLYSDVVEDYMNKNVSSDWGELRSEAMRLLQEEASLQEIVRLVGIDALSTRDRLVLEVARSIREDFLHQNAFHEVDTYSSMEKQYRMLKLIMIFYQEAQKALEKG 539          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_AERPE (V-type ATP synthase alpha chain OS=Aeropyrum pernix GN=atpA PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.047e-31
Identity = 76/205 (37.07%), Postives = 118/205 (57.56%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALED 614
            GGDFS+PVTS T   ++VFW LD KLA  +H+P++NWL+SYS Y     + ++E  D  +   R +A ++L RE +L EIV+LVG + L E DK+ LETA+L+++ +L QNAF P D F    K   +++ I+  +  + + +EKG       +T   I   LG L+  +V  KF  P +       + +K+ E      +AL++
Sbjct:  403 GGDFSEPVTSHTTRFIRVFWALDTKLAYSRHYPAINWLMSYSAYVDLVTQWWHENVDKRWREYRDEAMDILLRESELQEIVRLVGTEGLDEKDKMVLETARLIKDGFLKQNAFDPIDAFATPQKQFRLLKMIMDIHRKSLELIEKG-------VTTQQILQALGRLYIDIVKAKFTIPND-------QLEKIDEIRDRALKALDE 593          
The following BLAST results are available for this feature:
BLAST of CK938395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
VATA_CLOB11.237e-3250.00V-type ATP synthase alpha chain OS=Clostridium bot... [more]
VATA_METVS1.616e-3244.64V-type ATP synthase alpha chain OS=Methanococcus v... [more]
VATA_CLOTH3.599e-3246.98V-type ATP synthase alpha chain OS=Clostridium the... [more]
VATA_ARCFU4.701e-3240.59V-type ATP synthase alpha chain OS=Archaeoglobus f... [more]
VATA_STRPZ6.139e-3248.98V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_NATPD6.139e-3248.00V-type ATP synthase alpha chain OS=Natronomonas ph... [more]
VATA_THEVO8.018e-3243.33V-type ATP synthase alpha chain OS=Thermoplasma vo... [more]
VATA3_METHJ8.018e-3246.58V-type ATP synthase alpha chain 3 OS=Methanospiril... [more]
VATA_THEP31.047e-3147.26V-type ATP synthase alpha chain OS=Thermoanaerobac... [more]
VATA_AERPE1.047e-3137.07V-type ATP synthase alpha chain OS=Aeropyrum perni... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_D11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938395 ID=CK938395; Name=CK938395; organism=Citrus sinensis; type=EST; length=787bp
GGGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCCTCAGCATTGTG
CAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGAAAGCATTTTCC
TTCTGTAAACTGGCTTATTTCTTACTCGAAGTATTCAACAGCATTAGAGT
CTTTCTATGAGCAATTTGATCCGGATTTTATTAACATCAGGACAAAGGCT
AGAGAGGTGCTGCAGAGAGAAGATGACCTGAATGAAATTGTGCAACTTGT
CGGAAAGGATGCTTTGGCTGAAGGAGATAAGATTACGCTAGAGACTGCTA
AGCTTTTGAGGGAGGACTATCTTGCTCAGAACGCATTTACTCCATATGAC
AAGTTCTGCCCTTTCTACAAGTCTGTTTGGATGATGCGTAACATTATCCA
TTTCTATAACTTGGCCAATCAGGCCGTAGAGAAAGGAGCTGGTATGGATG
GTCAGAAGATAACTTACACCCTTATCAAGCATCGGCTGGGAGATCTATTT
TACAGATTAGTATCACAGAAGTTTGAGGACCCAGCAGAAGGAGAACCAGC
TCTGGTTGCTAAATTCAAAAAGCTGCACGAGGATCTGACCGCTGGTTTCC
GCGCCCTCGAGGATGAAACTCGATGATTGAAAGTGTCAAGTTAGATTCTT
TGTAGTCCCAGCGGCACCTCTGATCTTACGGTAACAACAGTTGGCTTCTC
AATGTTCCATTGAATGGAGAACCAAAATGTTGGTGGGTCCATGTTATGCC
ACTTTGCAGTGCTTGTTTGGCCTTCTAGTTGCANNNT
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