CK938395

Overview
NameCK938395
Unique NameCK938395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_THESI (V-type ATP synthase alpha chain OS=Thermococcus sp. (strain KI) GN=atpA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.409e-36
Identity = 82/196 (41.84%), Postives = 123/196 (62.76%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 587
            GGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    QAV++G  +D  +I    ++ ++G +       KFE   E   AL+ +  +  E+L
Sbjct:  393 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLRSYSLYVDAIQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYEKTMQAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDVEKVRALIDETNQQFEEL 579          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_PYRKO (V-type ATP synthase alpha chain OS=Pyrococcus kodakaraensis GN=atpA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.409e-36
Identity = 82/196 (41.84%), Postives = 123/196 (62.76%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 587
            GGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    QAV++G  +D  +I    ++ ++G +       KFE   E   AL+ +  +  E+L
Sbjct:  393 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLRSYSLYIDAIQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYEKTMQAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDVEKVRALIDETNQQFEEL 579          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METB6 (V-type ATP synthase alpha chain OS=Methanoregula boonei (strain 6A8) GN=atpA PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.409e-36
Identity = 88/203 (43.35%), Postives = 125/203 (61.58%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRAL 608
            GGDFS+PVT  TL IV+VFW LD KL+QR+HFP++NWL SYS Y  AL  +Y++   PD+  +R+ A  VLQ+E +L EIVQLVG DAL E ++IT+E A+++RE +L QNA+   D FC   K   MM+ I  + +LAN A  + AG+   +IT    K+ L  + +    + ++ P            K+ +D+ A F AL
Sbjct:  397 GGDFSEPVTQNTLRIVKVFWALDAKLSQRRHFPAINWLNSYSLYLDALHDWYDKNVSPDWNKLRSWAMGVLQKEAELQEIVQLVGSDALPETEQITIEVARMIREIFLQQNAYDAVDTFCDMQKQYDMMKAIRLYSDLANTA--QAAGVSPAQITTIKAKNELPQIKF---VKDYKQP----------LAKIEKDMDAEFNAL 584          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_THEGJ (V-type ATP synthase alpha chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.146e-36
Identity = 82/196 (41.84%), Postives = 123/196 (62.76%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 587
            GGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FYN   +AV++G  +D  +I    ++ ++G +       KFE   E   AL+ +     E+L
Sbjct:  393 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLRSYSLYLDAVQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYNRTMEAVDRGVPVD--EIARLPVREKIGRM-------KFEPDVEKIRALIDETNAQFEEL 579          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_PYRFU (V-type ATP synthase alpha chain OS=Pyrococcus furiosus GN=atpA PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.146e-36
Identity = 82/202 (40.59%), Postives = 124/202 (61.39%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRA 605
            GGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R KA E+LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR ++ FY     A+ +G  +  ++I    ++  +G +       KFE   E   AL+ K  +  ++L   + A
Sbjct:  821 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVQDWWHKNVDPEWRRMRDKAMELLQKEAELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPQKQVTMMRVLMTFYERTMDAISRGVPL--EEIAKLPVREEIGRM-------KFEPDIEKIRALIDKTNEQFDELLKKYGA 1013          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_META3 (V-type ATP synthase alpha chain OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=atpA PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.008e-36
Identity = 85/191 (44.50%), Postives = 119/191 (62.30%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKK 572
            GGDFS+PVTS TL IV+VFW LD  LA+R+HFP++NWL SYS Y   +E ++ E    D+  IR +A  +LQ+E +L EIVQLVG DAL + +++ LE +++LRED+L Q+AF+  D +C   K   M++ I+ FY+ A  AVEKGA  D   I    +K  +  + Y    +     A   PA+V K  K
Sbjct:  395 GGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLQSYSLYLDDIEDWWKENTAEDWREIRDEAMNLLQKEAELQEIVQLVGPDALPDKERVILEVSRMLREDFLQQDAFSDIDSYCSPMKQYTMLKTIMTFYSKAILAVEKGA--DPADIAKVSVKQDVAKMKYTPEEEFLNKLA---PAIVEKISK 580          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_STAMF (V-type ATP synthase alpha chain OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=atpA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.561e-35
Identity = 84/206 (40.78%), Postives = 125/206 (60.68%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDE 617
            G DFS+PVT ATL IV+  + LD  LA R+H+P++NWLISYS Y     + +++  DP +  +R KA  +LQ+E +L E+V+LVG +AL E DK+ LE A+++RED+L QNAF   D +CP  K+V MM+ I+ FY L  +A+++G  M  +KI     + ++  +   + +  FED           FK L ED+   F +L  E
Sbjct:  393 GADFSEPVTQATLRIVRALYALDVNLAYRRHYPAINWLISYSLYVDNVTDWWHKNIDPSWRELREKALAILQKEAELEELVRLVGAEALPEEDKLLLEVARMIREDFLQQNAFHEIDTYCPPRKAVLMMKAIMLFYELGLEAIKRGISM--EKIRELKSRVKIARM-KEIPNIDFED----------AFKSLFEDIRRDFESLMKE 585          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_PYRHO (V-type ATP synthase alpha chain OS=Pyrococcus horikoshii GN=atpA PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.561e-35
Identity = 79/196 (40.31%), Postives = 123/196 (62.76%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 587
            GGDFS+PV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  A++ ++ +  DP++  +R KA  +LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR +++FY+   +A+ +G  +  ++I    ++  +G +       KFE       +L+ K  +  E+L
Sbjct:  772 GGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPL--EEIAKLPVREEIGRM-------KFERDVSKIRSLIDKTNEQFEEL 958          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METMJ (V-type ATP synthase alpha chain OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=atpA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.561e-35
Identity = 75/147 (51.02%), Postives = 102/147 (69.39%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 440
            GGDFS+PVT  TL IV+VFW LD KL+QR+HFP++NWL SYS Y  AL  +Y+ +  P++  +R  A  VLQ+E +L EIVQLVG DAL + +++T+E A+++RE +L QNA+   D FCP  K   MM+ I H+ +LA  A   GA
Sbjct:  394 GGDFSEPVTQNTLRIVKVFWALDAKLSQRRHFPAINWLNSYSLYLDALNEWYDKEVSPEWNPLRAWAMGVLQKEAELQEIVQLVGSDALPDEEQVTIEVARMIREIFLQQNAYDAVDTFCPMSKQYDMMKAIKHYADLARTAQTGGA 540          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METAC (V-type ATP synthase alpha chain OS=Methanosarcina acetivorans GN=atpA PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.039e-35
Identity = 85/192 (44.27%), Postives = 117/192 (60.94%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGE-PALVAKFKK 572
            GGDFS+PVT  TL IV+VFW LD KL+QR+HFP++NWL SYS Y   L  ++ E   PD++ +R KA ++LQ E +L EIVQLVG DAL E  ++ LE  +++RE YL QNAF P D + PF K   +M+ I+ + + A  A++ G           +IK    D    L   KFE+  +G   A++AK  K
Sbjct:  388 GGDFSEPVTQNTLRIVKVFWALDAKLSQRRHFPAINWLNSYSLYKEDLNDWFTENVAPDYVAMREKAMDMLQTESELQEIVQLVGSDALPEEQQLLLEITRMIREIYLQQNAFHPIDTYSPFAKQYKIMQAIMKYGDAAMDALKSGVPAS------EIIKMESKD---ELPKVKFEEDFDGSLSAVLAKMDK 570          
The following BLAST results are available for this feature:
BLAST of CK938395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
VATA_THESI2.409e-3641.84V-type ATP synthase alpha chain OS=Thermococcus sp... [more]
VATA_PYRKO2.409e-3641.84V-type ATP synthase alpha chain OS=Pyrococcus koda... [more]
VATA_METB62.409e-3643.35V-type ATP synthase alpha chain OS=Methanoregula b... [more]
VATA_THEGJ3.146e-3641.84V-type ATP synthase alpha chain OS=Thermococcus ga... [more]
VATA_PYRFU3.146e-3640.59V-type ATP synthase alpha chain OS=Pyrococcus furi... [more]
VATA_META37.008e-3644.50V-type ATP synthase alpha chain OS=Methanococcus a... [more]
VATA_STAMF1.561e-3540.78V-type ATP synthase alpha chain OS=Staphylothermus... [more]
VATA_PYRHO1.561e-3540.31V-type ATP synthase alpha chain OS=Pyrococcus hori... [more]
VATA_METMJ1.561e-3551.02V-type ATP synthase alpha chain OS=Methanoculleus ... [more]
VATA_METAC2.039e-3544.27V-type ATP synthase alpha chain OS=Methanosarcina ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004443_D11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938395 ID=CK938395; Name=CK938395; organism=Citrus sinensis; type=EST; length=787bp
GGGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCCTCAGCATTGTG
CAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGAAAGCATTTTCC
TTCTGTAAACTGGCTTATTTCTTACTCGAAGTATTCAACAGCATTAGAGT
CTTTCTATGAGCAATTTGATCCGGATTTTATTAACATCAGGACAAAGGCT
AGAGAGGTGCTGCAGAGAGAAGATGACCTGAATGAAATTGTGCAACTTGT
CGGAAAGGATGCTTTGGCTGAAGGAGATAAGATTACGCTAGAGACTGCTA
AGCTTTTGAGGGAGGACTATCTTGCTCAGAACGCATTTACTCCATATGAC
AAGTTCTGCCCTTTCTACAAGTCTGTTTGGATGATGCGTAACATTATCCA
TTTCTATAACTTGGCCAATCAGGCCGTAGAGAAAGGAGCTGGTATGGATG
GTCAGAAGATAACTTACACCCTTATCAAGCATCGGCTGGGAGATCTATTT
TACAGATTAGTATCACAGAAGTTTGAGGACCCAGCAGAAGGAGAACCAGC
TCTGGTTGCTAAATTCAAAAAGCTGCACGAGGATCTGACCGCTGGTTTCC
GCGCCCTCGAGGATGAAACTCGATGATTGAAAGTGTCAAGTTAGATTCTT
TGTAGTCCCAGCGGCACCTCTGATCTTACGGTAACAACAGTTGGCTTCTC
AATGTTCCATTGAATGGAGAACCAAAATGTTGGTGGGTCCATGTTATGCC
ACTTTGCAGTGCTTGTTTGGCCTTCTAGTTGCANNNT
back to top