CK938395

Overview
NameCK938395
Unique NameCK938395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METST (V-type ATP synthase alpha chain OS=Methanosphaera stadtmanae (strain DSM 3091) GN=atpA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.022e-34
Identity = 79/180 (43.89%), Postives = 113/180 (62.78%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAE 539
            GGD S+PVT  TL I +VFW LD  LA R+HFPS+NWL SYS Y  ++ +++  Q   D+ ++R  A  +LQ+E +LNEIVQLVG DAL + D++TLE+A++LRED+L QNAF   D +C   K   M++ I+ +   A  A+  GA  D  K+    ++  LG + Y +   +FE   E
Sbjct:  394 GGDLSEPVTQNTLRIAKVFWALDASLADRRHFPSINWLNSYSLYVDSITNWWNSQIGSDWRDLRNTAMALLQKESELNEIVQLVGPDALPQKDRVTLESARMLREDFLQQNAFDDTDTYCSPSKQYNMLKTILLYNTTAQSALADGA--DINKLVNLDVRVDLGKMKY-IPEDEFEAKVE 570          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METBF (V-type ATP synthase alpha chain OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=atpA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 8.567e-34
Identity = 69/146 (47.26%), Postives = 102/146 (69.86%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 437
            GGDFS+PVT  TL IV+VFW LD KL+QR+HFP++NWL SYS Y  +L  ++ +   PD++ +R +A E+LQ E +L EIVQLVG DAL +  ++ LE  ++LRE +L QNAF P D + PF +   +++ I+ + + A +A++ G
Sbjct:  388 GGDFSEPVTQNTLRIVKVFWALDAKLSQRRHFPAINWLNSYSLYKDSLNDWFADNVAPDYVPLRERAMEMLQTESELQEIVQLVGSDALPDDQQLLLEITRMLREIFLQQNAFHPVDAYSPFAQQYRILKAIMKWGDAAMEALKSG 533          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_THESM (V-type ATP synthase alpha chain OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=atpA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.119e-33
Identity = 79/196 (40.31%), Postives = 121/196 (61.73%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 587
            GGD SDPV   TL +V+VFW LD  LA+R+HFP++NWL SYS Y  +++ +++   DP++  +R +A  +LQ+E +L EIV++VG DAL E +K  L  A++LREDYL Q+AF   D +C   K V MMR I++FY    +A++  AG+  ++I    ++  +G +       K+    E    L+ K K+  E+L
Sbjct:  393 GGDLSDPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDSIKDWWQNNVDPEWKAMRDEAMALLQKESELEEIVRIVGPDALPEREKAILLVARMLREDYLQQDAFHEVDTYCLPKKQVTMMRVILNFYRHTMRAID--AGIPVEEIAKLPVREEIGRM-------KYNPNIEEIAVLMEKTKEQFEEL 579          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_STRZJ (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain JJA) GN=atpA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 440
            GGD S+PVT  TL IV+VFWGLD  LAQR+HFP++NWL SYS Y  ++ ++ +  +    N + T+A   LQRE  L EIV+LVG D+L++ +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  395 GGDISEPVTQNTLRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDGKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSDNERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_STRPN (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae GN=atpA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 440
            GGD S+PVT  TL IV+VFWGLD  LAQR+HFP++NWL SYS Y  ++ ++ +  +    N + T+A   LQRE  L EIV+LVG D+L++ +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  395 GGDISEPVTQNTLRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDGKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSDNERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_STRPJ (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 440
            GGD S+PVT  TL IV+VFWGLD  LAQR+HFP++NWL SYS Y  ++ ++ +  +    N + T+A   LQRE  L EIV+LVG D+L++ +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  395 GGDISEPVTQNTLRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDGKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSDNERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_STRP4 (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=atpA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 73/147 (49.66%), Postives = 100/147 (68.03%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 440
            GGD S+PVT  TL IV+VFWGLD  LAQR+HFP++NWL SYS Y  ++ ++ +  +    N + T+A   LQRE  L EIV+LVG D+L++ +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  395 GGDISEPVTQNTLRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDGKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSDNERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METTH (V-type ATP synthase alpha chain OS=Methanobacterium thermoautotrophicum GN=atpA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 71/147 (48.30%), Postives = 100/147 (68.03%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 440
            GGD S+PVT  TL I +VFW LD  LA ++HFPS++WL SYS Y  +++ ++    DP++   R +A  +LQ+E +L EIVQLVG DAL + ++ITLET +++RED+L QNA+   D +C   K   M+R II F+  A  A+EKGA
Sbjct:  395 GGDLSEPVTQNTLRICKVFWALDASLADKRHFPSIDWLQSYSLYIDSVQEWWASNVDPEWRKFRDEAMALLQKEAELQEIVQLVGPDALPDRERITLETTRMIREDFLQQNAYHEVDTYCSPSKQFEMLRTIIMFHRNATAALEKGA 541          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METM7 (V-type ATP synthase alpha chain OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=atpA PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 78/175 (44.57%), Postives = 114/175 (65.14%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKF 524
            GGDFS+PVTS TL IV+VFW LD  LA+R+HFP++NWL SYS Y   +  +++Q    D+ ++R +A  +LQ+E +L EIVQLVG DAL + +++ LE A++LRED+L Q+A+   D +C   K   M++ I+ FY     AV KGA  D   I+   +K  +  + Y LV ++F
Sbjct:  394 GGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLTSYSLYIDDIAGWWQQNTAADWRSLRDEAMSLLQKEAELQEIVQLVGPDALPDRERVILEIARMLREDFLQQDAYHEVDSYCSPIKQYHMLKIIMTFYKKGLDAVAKGA--DPAGISAVTVKGDIARMKY-LVEEEF 565          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: NTPA_ENTHR (V-type sodium ATPase catalytic subunit A OS=Enterococcus hirae GN=ntpA PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 72/147 (48.98%), Postives = 100/147 (68.03%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 440
            GGD S+PVT  TL +V+VFWGLD  LAQ++HFPS+NW+ SYS YST +  + +Q    D+ ++ T+   +LQ E+ LNEIV+LVG D+L++ D++TLE AK +REDYL QNAF   D F    K   M++ I+ F   A +A+  GA
Sbjct:  394 GGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGA 540          
The following BLAST results are available for this feature:
BLAST of CK938395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
VATA_METST5.022e-3443.89V-type ATP synthase alpha chain OS=Methanosphaera ... [more]
VATA_METBF8.567e-3447.26V-type ATP synthase alpha chain OS=Methanosarcina ... [more]
VATA_THESM1.119e-3340.31V-type ATP synthase alpha chain OS=Thermococcus si... [more]
VATA_STRZJ1.461e-3349.66V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRPN1.461e-3349.66V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRPJ1.461e-3349.66V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRP41.461e-3349.66V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_METTH1.461e-3348.30V-type ATP synthase alpha chain OS=Methanobacteriu... [more]
VATA_METM71.461e-3344.57V-type ATP synthase alpha chain OS=Methanococcus m... [more]
NTPA_ENTHR1.461e-3348.98V-type sodium ATPase catalytic subunit A OS=Entero... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004443_D11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938395 ID=CK938395; Name=CK938395; organism=Citrus sinensis; type=EST; length=787bp
GGGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCCTCAGCATTGTG
CAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGAAAGCATTTTCC
TTCTGTAAACTGGCTTATTTCTTACTCGAAGTATTCAACAGCATTAGAGT
CTTTCTATGAGCAATTTGATCCGGATTTTATTAACATCAGGACAAAGGCT
AGAGAGGTGCTGCAGAGAGAAGATGACCTGAATGAAATTGTGCAACTTGT
CGGAAAGGATGCTTTGGCTGAAGGAGATAAGATTACGCTAGAGACTGCTA
AGCTTTTGAGGGAGGACTATCTTGCTCAGAACGCATTTACTCCATATGAC
AAGTTCTGCCCTTTCTACAAGTCTGTTTGGATGATGCGTAACATTATCCA
TTTCTATAACTTGGCCAATCAGGCCGTAGAGAAAGGAGCTGGTATGGATG
GTCAGAAGATAACTTACACCCTTATCAAGCATCGGCTGGGAGATCTATTT
TACAGATTAGTATCACAGAAGTTTGAGGACCCAGCAGAAGGAGAACCAGC
TCTGGTTGCTAAATTCAAAAAGCTGCACGAGGATCTGACCGCTGGTTTCC
GCGCCCTCGAGGATGAAACTCGATGATTGAAAGTGTCAAGTTAGATTCTT
TGTAGTCCCAGCGGCACCTCTGATCTTACGGTAACAACAGTTGGCTTCTC
AATGTTCCATTGAATGGAGAACCAAAATGTTGGTGGGTCCATGTTATGCC
ACTTTGCAGTGCTTGTTTGGCCTTCTAGTTGCANNNT
back to top