CK938395

Overview
NameCK938395
Unique NameCK938395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METBA (V-type ATP synthase alpha chain OS=Methanosarcina barkeri GN=atpA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 437
            GGDFS+PVT  TL IV+VFW LD KL+QR+HFP++NWL SYS Y  +L  ++ +   PD++ +R +A E+LQ E +L EIVQLVG DAL +  ++ LE  ++LRE +L QNAF P D + PF +   +++ I+ + + A  A++ G
Sbjct:  388 GGDFSEPVTQNTLRIVKVFWALDAKLSQRRHFPAINWLNSYSLYKDSLNDWFADNVAPDYVPLRERAMEMLQTESELQEIVQLVGSDALPDDQQLLLEITRMLREIFLQQNAFHPVDAYSPFDQQYKILKAIMKWGDAAMDALKSG 533          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA1_CLOTE (V-type ATP synthase alpha chain 1 OS=Clostridium tetani GN=atpA1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.909e-33
Identity = 73/146 (50.00%), Postives = 98/146 (67.12%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 437
            GGD S+PVT ATL IV+VFWGLD +LA R+HFP++NWL SYS Y   +  +  E    D++ +R KA  +LQ E +L EI +LVG DAL+E D++ LE AK LREDYL QNAF   D + P  K   M++ ++ F + A +A+E G
Sbjct:  395 GGDLSEPVTQATLRIVKVFWGLDSQLAYRRHFPAINWLNSYSLYLDKVGPWMNENVAEDWVELRQKAMALLQEEANLQEIARLVGIDALSEEDRLKLEVAKSLREDYLQQNAFHDVDTYAPLNKQYRMLKAVLQFGDEARKALESG 540          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_THET2 (V-type ATP synthase alpha chain OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=atpA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 82/203 (40.39%), Postives = 123/203 (60.59%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRAL 608
            GGD S+PVT +TL IV  FW LD  LA R+HFP++NW  SYS +++AL+ +Y E    D+  +R    E+LQRE  L EIVQLVG DAL + +++ +E  +++RED+L QNAF   D +C   K+  +M+ I+ FY  A  A+++G  +D  +I    +  R+G    R VS++ E PA  E A+        +++   F+AL
Sbjct:  388 GGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAFHEVDAYCSMRKAYGIMKMILAFYKEAEAAIKRGVSID--EILQLPVVERIGRA--RYVSEE-EFPAYFEEAM--------KEIQGAFKAL 577          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METM6 (V-type ATP synthase alpha chain OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=atpA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 78/175 (44.57%), Postives = 113/175 (64.57%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP-DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKF 524
            GGDFS+PVTS TL IV+VFW LD  LA+R+HFP++NWL SYS Y   +  +++Q    D+ ++R +A  +LQ+E +L EIVQLVG DAL + +++ LE A++LRED+L Q+A+   D +C   K   M++ I+ FY     AV KGA  D   I+   +K  +  + Y LV  +F
Sbjct:  394 GGDFSEPVTSNTLRIVKVFWALDANLARRRHFPAINWLTSYSLYIDDIAGWWQQNTAADWRSLRDEAMSLLQKEAELQEIVQLVGPDALPDRERVILEIARMLREDFLQQDAYHEVDSYCSPIKQYHMLKIIMTFYKKGLDAVAKGA--DPAGISAVTVKGDIARMKY-LVEDEF 565          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_METLZ (V-type ATP synthase alpha chain OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=atpA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 75/163 (46.01%), Postives = 106/163 (65.03%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRL 488
            GGDFS+PVT  TL IV+VFW LD  L++R+HFP++NWL SYS Y   L  +Y E+  PD+  +R+   EVLQ+E +L EIVQLVG DAL E ++IT+E A+++RE +L QN F P D +C   K + M + I  + +LA  A  + AG+   +I     K+ +
Sbjct:  392 GGDFSEPVTQNTLRIVKVFWALDANLSRRRHFPAINWLQSYSLYMAQLNDYYDEKVSPDWNKLRSWFMEVLQKEAELQEIVQLVGSDALPETEQITIEVARMMRELFLQQNGFDPVDTYCDLPKQLDMFKMIRTYADLAYAA--QAAGVPPSQILAVKAKNEM 552          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_CLOPS (V-type ATP synthase alpha chain OS=Clostridium perfringens (strain SM101 / Type A) GN=atpA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 77/153 (50.33%), Postives = 101/153 (66.01%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 449
            GGD S+PVT +TL IV+VFWGLD +LA ++HFPS+NWL SYS Y   LE   E  D     D+  +RT+A  +LQ E +L EIV+LVG DAL+EGD++ LE AK +REDYL QNAF   D +    K   M+  I+ F + A +A+E G  +D
Sbjct:  394 GGDISEPVTQSTLRIVKVFWGLDAQLAYKRHFPSINWLTSYSLY---LEKMGEWMDAHVADDWSALRTEAMALLQEEANLEEIVRLVGMDALSEGDRLKLEVAKSIREDYLQQNAFHENDTYTSLNKQYKMLNLILSFRHEAEKALEAGVYLD 543          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_CLOPE (V-type ATP synthase alpha chain OS=Clostridium perfringens GN=atpA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 77/153 (50.33%), Postives = 101/153 (66.01%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 449
            GGD S+PVT +TL IV+VFWGLD +LA ++HFPS+NWL SYS Y   LE   E  D     D+  +RT+A  +LQ E +L EIV+LVG DAL+EGD++ LE AK +REDYL QNAF   D +    K   M+  I+ F + A +A+E G  +D
Sbjct:  394 GGDISEPVTQSTLRIVKVFWGLDAQLAYKRHFPSINWLTSYSLY---LEKMGEWMDAHVADDWSALRTEAMALLQEEANLEEIVRLVGMDALSEGDRLKLEVAKSIREDYLQQNAFHENDTYTSLNKQYKMLNLILSFKHEAEKALEAGVYLD 543          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_CLOP1 (V-type ATP synthase alpha chain OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=atpA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 77/153 (50.33%), Postives = 101/153 (66.01%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDP----DFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 449
            GGD S+PVT +TL IV+VFWGLD +LA ++HFPS+NWL SYS Y   LE   E  D     D+  +RT+A  +LQ E +L EIV+LVG DAL+EGD++ LE AK +REDYL QNAF   D +    K   M+  I+ F + A +A+E G  +D
Sbjct:  394 GGDISEPVTQSTLRIVKVFWGLDAQLAYKRHFPSINWLTSYSLY---LEKMGEWMDAHVADDWSALRTEAMALLQEEANLEEIVRLVGMDALSEGDRLKLEVAKSIREDYLQQNAFHENDTYTSLNKQYKMLNLILSFKHEAEKALEAGVYLD 543          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA2_METHJ (V-type ATP synthase alpha chain 2 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpA2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.493e-33
Identity = 68/145 (46.90%), Postives = 97/145 (66.90%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEK 434
            GGDFS+P+T  TL I   FW LD  LA R+H+PSVNW+ SYS Y   +E ++ E+   D+   R +A  +LQ+E +L EIVQLVG DAL + +K+ LE AK++RED+L Q+A++  D FCP  K  WM++ II +Y+    A+ +
Sbjct:  389 GGDFSEPITQNTLRIAGTFWALDANLAYRRHYPSVNWIRSYSLYLEDVEDWFSEKVARDWYQFRGRAMYILQKEVELQEIVQLVGPDALPDKEKVVLEIAKIIREDFLQQSAYSDDDSFCPLEKQYWMLKIIIWYYDAIRAAMRR 533          
BLAST of CK938395 vs. ExPASy Swiss-Prot
Match: VATA_THET8 (V-type ATP synthase alpha chain OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=atpA PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.553e-33
Identity = 81/203 (39.90%), Postives = 123/203 (60.59%), Query Frame = 3
Query:    3 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRAL 608
            GGD S+PVT +TL IV  FW LD  LA R+HFP++NW  SYS +++AL+ +Y E    D+  +R    E+LQRE  L EIVQLVG DAL + +++ +E  +++RED+L QNA+   D +C   K+  +M+ I+ FY  A  A+++G  +D  +I    +  R+G    R VS++ E PA  E A+        +++   F+AL
Sbjct:  388 GGDMSEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDALQDAERLVIEVGRIIREDFLQQNAYHEVDAYCSMKKAYGIMKMILAFYKEAEAAIKRGVSID--EILQLPVLERIGRA--RYVSEE-EFPAYFEEAM--------KEIQGAFKAL 577          
The following BLAST results are available for this feature:
BLAST of CK938395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 166
Match NameE-valueIdentityDescription
VATA_METBA1.909e-3347.26V-type ATP synthase alpha chain OS=Methanosarcina ... [more]
VATA1_CLOTE1.909e-3350.00V-type ATP synthase alpha chain 1 OS=Clostridium t... [more]
VATA_THET22.493e-3340.39V-type ATP synthase alpha chain OS=Thermus thermop... [more]
VATA_METM62.493e-3344.57V-type ATP synthase alpha chain OS=Methanococcus m... [more]
VATA_METLZ2.493e-3346.01V-type ATP synthase alpha chain OS=Methanocorpuscu... [more]
VATA_CLOPS2.493e-3350.33V-type ATP synthase alpha chain OS=Clostridium per... [more]
VATA_CLOPE2.493e-3350.33V-type ATP synthase alpha chain OS=Clostridium per... [more]
VATA_CLOP12.493e-3350.33V-type ATP synthase alpha chain OS=Clostridium per... [more]
VATA2_METHJ2.493e-3346.90V-type ATP synthase alpha chain 2 OS=Methanospiril... [more]
VATA_THET85.553e-3339.90V-type ATP synthase alpha chain OS=Thermus thermop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_D11 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938395 ID=CK938395; Name=CK938395; organism=Citrus sinensis; type=EST; length=787bp
GGGGAGGAGATTTCTCAGATCCTGTAACATCTGCCACCCTCAGCATTGTG
CAGGTCTTCTGGGGTCTGGATAAGAAACTTGCGCAGAGAAAGCATTTTCC
TTCTGTAAACTGGCTTATTTCTTACTCGAAGTATTCAACAGCATTAGAGT
CTTTCTATGAGCAATTTGATCCGGATTTTATTAACATCAGGACAAAGGCT
AGAGAGGTGCTGCAGAGAGAAGATGACCTGAATGAAATTGTGCAACTTGT
CGGAAAGGATGCTTTGGCTGAAGGAGATAAGATTACGCTAGAGACTGCTA
AGCTTTTGAGGGAGGACTATCTTGCTCAGAACGCATTTACTCCATATGAC
AAGTTCTGCCCTTTCTACAAGTCTGTTTGGATGATGCGTAACATTATCCA
TTTCTATAACTTGGCCAATCAGGCCGTAGAGAAAGGAGCTGGTATGGATG
GTCAGAAGATAACTTACACCCTTATCAAGCATCGGCTGGGAGATCTATTT
TACAGATTAGTATCACAGAAGTTTGAGGACCCAGCAGAAGGAGAACCAGC
TCTGGTTGCTAAATTCAAAAAGCTGCACGAGGATCTGACCGCTGGTTTCC
GCGCCCTCGAGGATGAAACTCGATGATTGAAAGTGTCAAGTTAGATTCTT
TGTAGTCCCAGCGGCACCTCTGATCTTACGGTAACAACAGTTGGCTTCTC
AATGTTCCATTGAATGGAGAACCAAAATGTTGGTGGGTCCATGTTATGCC
ACTTTGCAGTGCTTGTTTGGCCTTCTAGTTGCANNNT
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