CX675488

Overview
NameCX675488
Unique NameCX675488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.211e-48
Identity = 94/147 (63.95%), Postives = 115/147 (78.23%), Query Frame = -3
Query:  226 NDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 663
            + F+G K AYAL++GL V AC+GE LE+RE+G T  V  EQ KA A+ + +W+N+V+AYEPVWAIGTGKVA+P QAQEVH  +R+WLK NVSAEVA+ TRII GGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ + T KK
Sbjct:  165 DQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKK 311          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.065e-48
Identity = 95/147 (64.63%), Postives = 113/147 (76.87%), Query Frame = -3
Query:  226 NDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 663
            ++F+G K AYALS+GL V AC+GE LE+RE+G T  V   Q KA A+ + +WDN+V+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRII GGSVNG N  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  166 DEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.697e-48
Identity = 90/138 (65.22%), Postives = 113/138 (81.88%), Query Frame = -3
Query:  253 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFID 666
            S++ +G KV++ALS+GL V AC+GE L++RE+G T  VV E T+ IA+ + +W  VVLAYEPVWAIGTGK A+P Q+QE+H +LRKWLK+NVS  VA S RII GGSV GA CKELA++PDVDGFLVGGASLKPEF++
Sbjct:  104 SDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVE 241          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.523e-48
Identity = 94/142 (66.20%), Postives = 111/142 (78.17%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            S++ +G KVA+AL  GL V AC+GE L++RE+G T  VV  QTK IA+ + +W  VVLAYEPVWAIGTGK A+P QAQEVH +LR+WLK NVS  VA S RII GGSV G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:  105 SDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.009e-48
Identity = 91/142 (64.08%), Postives = 112/142 (78.87%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            +++ +G KVA+AL   L V AC+GE LE+RE+G+T  V+  QT+ IAE + +W+ VVLAYEPVWAIGTGK ATP QAQEVH +LR W + N+S EV+ S RII GGSV  ANC+ELA+Q DVDGFLVGGASLKPEFIDII +
Sbjct:  105 NDELIGQKVAHALESDLSVIACIGEKLEEREAGTTEDVIFAQTQVIAENVMDWEKVVLAYEPVWAIGTGKTATPEQAQEVHEKLRAWFRANISEEVSDSLRIIYGGSVTAANCRELASQTDVDGFLVGGASLKPEFIDIINA 246          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.982e-47
Identity = 100/149 (67.11%), Postives = 111/149 (74.50%), Query Frame = -3
Query:  226 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAE-KISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 666
            SN+FVG K AYA S+GL V AC+GE LE+RE+G T  V  +Q K+ A      WDNVV+AYEPVWAIGTGKVA+P QAQEVH  +R WLK NVS EVA+ TRII GGSVNG N   LAAQ DVDGFLVGGASLK PEF  II S T KK
Sbjct:  106 SNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKK 254          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 186.808 bits (473), Expect = 8.677e-47
Identity = 87/140 (62.14%), Postives = 105/140 (75.00%), Query Frame = -3
Query:  247 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 666
            S++FV DK  +AL QGL V AC+GETL +RE+  T+ VV  Q  AIA+K+ NW  +V+AYEPVWAIGTGK ATP QAQEVHAE+RKW  + + A VA   R+I GGSVNG NCKE     D+DGFLVGGASLKPEF +I+
Sbjct:  105 SDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIV 244          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.218e-45
Identity = 93/145 (64.14%), Postives = 106/145 (73.10%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISN---WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            S++ V +KV +AL++GL V AC+GETL +RESG T  V   Q  AIA KI +   W  VV+AYEPVWAIGTGKVA+P QAQEVH  LRKW K N  + V    RII GGSV  ANCKELA Q DVDGFLVGGASLKPEFIDI K+
Sbjct:  106 SDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFIDICKA 250          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.385e-44
Identity = 83/142 (58.45%), Postives = 107/142 (75.35%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            S++F+  K  YAL  G+ V  C GE+ + R++G T+  V  Q  A+A++I++W NVV+AYEP+WAIGTG VAT  QAQEVHA +R WLK NVS +VA  TRI+ GGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:  105 SDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.809e-44
Identity = 85/143 (59.44%), Postives = 109/143 (76.22%), Query Frame = -3
Query:  241 NDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKIS--NWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 663
            ++FV  K   A++ GL V  C+GE+LE+RE+G T+ VV  Q  A+AE++S   W+ VV+AYEP+WAIGTGKVAT  QAQEVHA +RKWL + +S E A + R+I GGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:  105 DEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of CX675488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_FRAAN1.211e-4863.95Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_ARATH2.065e-4864.63Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIS_LATCH2.697e-4865.22Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPISB_DANRE3.523e-4866.20Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_ORYLA6.009e-4864.08Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]
TPIS_STELP2.982e-4767.11Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_SCHPO8.677e-4762.14Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_SCHJA6.218e-4564.14Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_NEUCR1.385e-4458.45Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_PARBA1.809e-4459.44Triosephosphate isomerase OS=Paracoccidioides bras... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675488 ID=CX675488; Name=CX675488; organism=Citrus sinensis; type=EST; length=668bp
AAGAAGGGAAAAGCAACCATTTATTAAATCCACAATGATAAGTTTCAAAT
CCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTA
TTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATTACAAC
GCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCG
AGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACTTGATA
ATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATC
CACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTACAGAAC
CTCCNTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACATTGTCT
TTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGT
TGCAACCTTCCCGGTACCAATGGCCCANACTGGCTCATAAGCCAACACAA
CATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCC
ACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCTCCNAC
ACAAGCNATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTTATCTC
CCACAAAATCATTTGACT
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