CX675488

Overview
NameCX675488
Unique NameCX675488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_STRPC (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=tpiA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = -3 
Query:  262 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPE 666
            +++ +  K     + GL    C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+  GGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:  106 TDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_STRPB (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=tpiA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = -3 
Query:  262 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPE 666
            +++ +  K     + GL    C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+  GGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:  106 TDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_STRP3 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M3 GN=tpiA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = -3 
Query:  262 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPE 666
            +++ +  K     + GL    C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+  GGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:  106 TDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_STRP1 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M1 GN=tpiA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 56/137 (40.88%), Postives = 75/137 (54.74%), Query Frame = -3 
Query:  262 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPE 666
            +++ +  K     + GL    C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+  GGSV   N K+  A PDVDG LVGGASL+ +
Sbjct:  106 TDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLEAD 242
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB1 (Triosephosphate isomerase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = -3 
Query:  262 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNW--DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPE 666
            +++ V  KV  A    L    C GE+LE+RE   T  V+  Q K   +++S    + +V+AYEP+WAIGTGK AT  QA E    +R  +K      VA   RI  GGSV     K   A+ ++DG LVGGASLK E
Sbjct:  104 TDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKAMYGESVADKIRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 57/141 (40.43%), Postives = 81/141 (57.45%), Query Frame = -3 
Query:  247 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 666
            +++ V  ++A A   GL    CVGE+ +QRE G T + +  Q     + I + +N+V+AYEP+WAIGTG+     +A  V   +R+ L +       A   I+ GGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:  110 TDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGN-------AQLPILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_STRPG (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tpiA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = -3 
Query:  268 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLK 666
            +++ +  K     + GL    C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+  GGSV   N K+  A PDVDG LVGGASL+
Sbjct:  106 TDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLE 240
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_STRP6 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M6 GN=tpiA PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = -3 
Query:  268 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLK 666
            +++ +  K     + GL    C GE+LE  E+G  V  V  Q  A    +S     ++VLAYEP+WAIGTGK AT   AQ +   +R  +  +   EVA   R+  GGSV   N K+  A PDVDG LVGGASL+
Sbjct:  106 TDEDINKKAKAIFANGLTPIVCCGESLETYEAGKAVEFVGAQVSAALAGLSAEQVASLVLAYEPIWAIGTGKSATQDDAQNMCKAVRDVVAADFGQEVADKVRVQYGGSVKPENVKDYMACPDVDGALVGGASLE 240
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_PROMS (Triosephosphate isomerase OS=Prochlorococcus marinus (strain AS9601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 56/137 (40.88%), Postives = 79/137 (57.66%), Query Frame = -3 
Query:  265 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWD--NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLK-DNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKP 666
            S++ +  +  +A S GL    CVGETLEQRE G  V V+   T+ + + + N D  N+++AYEP+WAIGTGK      A ++ + +RK +  D+V         I  GGSV   N  E+ +  D+DG LVGGASL P
Sbjct:  106 SDEQINKRAVFAQSSGLTPIVCVGETLEQRERGEAVRVI---TRQVEQGLENTDPSNLIVAYEPIWAIGTGKTCQAEDANKICSLIRKLIGFDDVI--------IQYGGSVKPNNIDEIMSMSDIDGVLVGGASLDP 231
[Close]
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMS (Triosephosphate isomerase OS=Mycoplasma mycoides subsp. mycoides SC GN=tpiA PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.487e-19
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = -3 
Query:  271 VGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNV--VLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASL 654
            V  K    L   +    C GETL+ +ESG T+  V  Q   + E I   D +  ++AYEP+WAIGTGK AT + A+EV  ++R  L        A    I  GGSV  +N +E    P++DG LVGGASL
Sbjct:  106 VNKKAKVLLENNITPIICCGETLQTKESGKTIEFVNNQINIMFEGIKKEDAIKAIIAYEPIWAIGTGKTATSSDAEEVCKQIRNNLSKIYDKNTAEQIIIQYGGSVKPSNIQEYLKMPNIDGALVGGASL 235
The following BLAST results are available for this feature:
BLAST of CX675488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_STRPC3.436e-1940.88Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRPB3.436e-1940.88Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP33.436e-1940.88Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP13.436e-1940.88Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_CLOB13.436e-1941.61Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_SYNJB4.487e-1940.43Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_STRPG4.487e-1941.48Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP64.487e-1941.48Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_PROMS4.487e-1940.88Triosephosphate isomerase OS=Prochlorococcus marin... [more]
TPIS_MYCMS4.487e-1940.77Triosephosphate isomerase OS=Mycoplasma mycoides s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675488 ID=CX675488; Name=CX675488; organism=Citrus sinensis; type=EST; length=668bp
AAGAAGGGAAAAGCAACCATTTATTAAATCCACAATGATAAGTTTCAAAT
CCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTA
TTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATTACAAC
GCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCG
AGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACTTGATA
ATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATC
CACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTACAGAAC
CTCCNTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACATTGTCT
TTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGT
TGCAACCTTCCCGGTACCAATGGCCCANACTGGCTCATAAGCCAACACAA
CATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCC
ACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCTCCNAC
ACAAGCNATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTTATCTC
CCACAAAATCATTTGACT
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