CX675488

Overview
NameCX675488
Unique NameCX675488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.483e-38
Identity = 78/142 (54.93%), Postives = 102/142 (71.83%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            S+  + +K  +AL  G+KV  C+GE LE+RE+G T  V   Q +AI +K  +W+N+V+AYEPVWAIGTGK A+  QAQEVH  +R +LK+ VS  VA +TRII GGSV   N  EL  +PD+DGFLVGGASLKP+F+ II +
Sbjct:  104 SDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPDFVKIINA 245          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.937e-38
Identity = 78/143 (54.55%), Postives = 98/143 (68.53%), Query Frame = -3
Query:  238 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 666
            +++ V +K+  +L   LK   C GE+LEQRE   T+ V+ +Q KA  + I N+DNV+LAYEP+WAIGTGK ATP QAQ VH E+RK +KD    + A   RI+ GGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:  105 TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.937e-38
Identity = 78/143 (54.55%), Postives = 98/143 (68.53%), Query Frame = -3
Query:  238 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 666
            +++ V +K+  +L   LK   C GE+LEQRE   T+ V+ +Q KA  + I N+DNV+LAYEP+WAIGTGK ATP QAQ VH E+RK +KD    + A   RI+ GGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:  105 TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_KLULA (Triosephosphate isomerase OS=Kluyveromyces lactis GN=TPI1 PE=3 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.937e-38
Identity = 74/142 (52.11%), Postives = 101/142 (71.13%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            +++ V +K  +AL  G+KV  C+GETLE+++   T+ VV  Q +A+ EK+ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R++L + +S +VA S RI+ GGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  105 TDEIVAEKTKFALDSGVKVILCIGETLEEKQQNITLQVVQRQLQAVLEKVQDWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.937e-38
Identity = 80/123 (65.04%), Postives = 93/123 (75.61%), Query Frame = -3
Query:  298 NDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKI-SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVD 663
            +D V +KVA+AL  GLKV AC+GETLE+RE+G T  VV  QTKA+   I +NW NVVLAYEPVWAIGTGK A+P QAQ+VHA LR WL  N S +VAAS RI  GGSV  AN KEL+A PD+D
Sbjct:   93 DDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGKTASPQQAQDVHASLRNWLSSNASPDVAASVRIQYGGSVTAANAKELSAFPDID 215          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.530e-38
Identity = 74/138 (53.62%), Postives = 99/138 (71.74%), Query Frame = -3
Query:  241 VGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 654
            V +K A+AL +G+ V  C+GETL+++++G T+ VV  Q   + EK+ +W NVV+AYEPVWAIGTG  AT   AQ++HA +R +L +  S +VA + RI+ GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  109 VAEKTAFALERGVSVILCIGETLDEKKAGVTLDVVKRQLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.316e-38
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = -3
Query:  241 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 666
            +++F+ DK  +AL  G+KV  C+GETLE+++ G T+ VV  Q +A+ +K+ +W NVV+AYEPVWAIGTG  AT   AQ +H  +R++L   +S + A   RI+ GGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:  105 TDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.142e-37
Identity = 73/138 (52.90%), Postives = 96/138 (69.57%), Query Frame = -3
Query:  241 VGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 654
            V +K  +AL QGL V  C+GETLE++++G T+ VV  Q  A+  ++ +W NVV+AYEPVWAIGTG  AT   AQ++H  +R +L + +  + A  TRI+ GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:  109 VAEKTKFALDQGLGVILCIGETLEEKKAGVTLKVVERQLDAVIAEVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHHSIRSYLAEKLGKDTAEKTRILYGGSANGANAGTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.040e-36
Identity = 75/144 (52.08%), Postives = 100/144 (69.44%), Query Frame = -3
Query:  247 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKISN----WDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 666
            +N+    K   AL +G+ V  C GETL++R++ +T+ V   Q +A+ ++I      W+NVV+AYEPVW+IGTG VATP QA+EVH  LRKW  + V AE A   RII GGS NG+NC++L   P++DGFLVGGASLKPEF  +I
Sbjct:  106 TNEQSAKKAKRALDKGMTVIFCTGETLDERKANNTMEVNIAQLEALKKEIGESKKLWENVVIAYEPVWSIGTGVVATPEQAEEVHVGLRKWFAEKVCAEGAQHIRIIYGGSANGSNCEKLGQCPNIDGFLVGGASLKPEFTTMI 249          
BLAST of CX675488 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.175e-35
Identity = 77/149 (51.68%), Postives = 99/149 (66.44%), Query Frame = -3
Query:  226 SNDFVGDKVAYALSQGLKVXACVGETLEQRESGSTVAVVAEQTKAIAEKI-SNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIXGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSATVKK 666
            S++ +  K  YA+S GL V  C+GE L  R+S +T  +++EQ K  A      W  +V+AYEPVWAIGTG VATP +AQ+ H  +RKW+ + VS +VA  T I+ GGSVN  NC  L+ Q D+DGFLVGGASL   +FI IIKSA  KK
Sbjct:  108 SSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAVATPQEAQDTHVFIRKWISEKVSEDVAKKTSIMYGGSVNADNCHNLSKQSDIDGFLVGGASLVASDFIAIIKSAVPKK 256          
The following BLAST results are available for this feature:
BLAST of CX675488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CAEEL1.483e-3854.93Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_PLAFA1.937e-3854.55Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF71.937e-3854.55Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_KLULA1.937e-3852.11Triosephosphate isomerase OS=Kluyveromyces lactis ... [more]
TPIS_HELVI1.937e-3865.04Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_ASHGO2.530e-3853.62Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_KLUMA4.316e-3851.41Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_CANGA2.142e-3752.90Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPI2_GIALA4.040e-3652.08Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_DICDI1.175e-3551.68Triosephosphate isomerase OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675488 ID=CX675488; Name=CX675488; organism=Citrus sinensis; type=EST; length=668bp
AAGAAGGGAAAAGCAACCATTTATTAAATCCACAATGATAAGTTTCAAAT
CCCCACTGAAATAGGAAAGAGATTCTTAAGAATTCTGAAGATTTAACTTA
TTATACTGGAAAGGCGTTGGTAACACTTAACAGACCACAAAAATTACAAC
GCTAGTTTCCAGAACGCATAACAGAGAAAACTGCAGGCATCAGCAAGCCG
AGTAGCTTGGTCTTTAACTTCAATTCTTCTTCACTGTGGCAGACTTGATA
ATATCGATGAACTCCGGCTTTAGAGAAGCTCCACCAACCAAAAATCCATC
CACATCAGGTTGTGCTGCCAATTCTTTGCAATTTGCTCCATTTACAGAAC
CTCCNTAGATGATTCTAGTTGATGCTGCAACTTCAGCACTGACATTGTCT
TTAAGCCATTTCCTCAGTTCAGCATGGACTTCCTGAGCCTGAGCAGGGGT
TGCAACCTTCCCGGTACCAATGGCCCANACTGGCTCATAAGCCAACACAA
CATTGTCCCAGTTGGATATTTTTTCTGCGATTGCTTTTGTTTGTTCAGCC
ACAACAGCCACTGTAGATCCTGATTCTCGCTGTTCCAGAGTCTCTCCNAC
ACAAGCNATGACTTTCAAGCCTTGAGAAAGTGCATAAGCAACTTTATCTC
CCACAAAATCATTTGACT
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