CK938386

Overview
NameCK938386
Unique NameCK938386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: ALGD_PSESY (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. syringae GN=algD PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.114e-17
Identity = 74/255 (29.02%), Postives = 122/255 (47.84%), Query Frame = 2
Query:   83 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQV 820
            ++I   G GYVG      ++ +    EV  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHEVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREV 241          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: WECC_SHIFL (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigella flexneri GN=wecC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 81/252 (32.14%), Postives = 112/252 (44.44%), Query Frame = 2
Query:   89 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 811
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F           I   PE +  G  + +L   DRV+  G  TP        L  ++     E   + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASELYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV 240          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: WECC_ECOLI (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli (strain K12) GN=wecC PE=3 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 81/252 (32.14%), Postives = 112/252 (44.44%), Query Frame = 2
Query:   89 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 811
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F           I   PE +  G  + +L   DRV+  G  TP        L  ++     E   + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASELYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV 240          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: WECC_ECO57 (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escherichia coli O157:H7 GN=wecC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 81/252 (32.14%), Postives = 112/252 (44.44%), Query Frame = 2
Query:   89 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 811
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK    G  L  ST       EAD   ++V TP K          D+TY ESAAR IA V K   +V+ +ST PV + E + + L      + F           I   PE +  G  + +L   DRV+  G  TP        L  ++     E   + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLASVVKTAVEGGFLRASTTPV----EADAWLIAVPTPFK-----GDHEPDMTYVESAARSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASELYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINV 240          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: ALGD_PSESM (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. tomato GN=algD PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 73/255 (28.63%), Postives = 122/255 (47.84%), Query Frame = 2
Query:   83 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQV 820
            ++I   G GYVG      ++ +    +V  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHDVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGLATGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKNTRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREV 241          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: ALGD_PSESH (GDP-mannose 6-dehydrogenase OS=Pseudomonas syringae pv. phaseolicola GN=algD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.362e-16
Identity = 73/255 (28.63%), Postives = 122/255 (47.84%), Query Frame = 2
Query:   83 VKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQ--CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----VIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS---KGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVSQV 820
            ++I   G GYVG      ++ +    +V  VDIS ++I+  N+ + PI EPGL+ ++++    GK L  +TD  + +   D+  + V TP+K  G       +L Y ES  R    V+ D +    IVV  + +P   A  +  IL   S    G+ F +  NPEFL E TAI+D   P   +IG  +   G      L+ +Y     +  I+  ++  AE+ K   N + A +++  N +  + +A G +  +V
Sbjct:    1 MRISIFGLGYVGAVCAGCLSAR--GHDVVGVDISSTKIDLINNGKSPIVEPGLEELLQKGISTGK-LRGTTDFAEAIRATDLSMICVGTPSKKNG-----DLELDYIESVCREIGYVLRDKATRHTIVVRSTVLPGTVANVVIPILEDCSGKKAGVDFGVAVNPEFLRESTAIKDYDLPPMTVIGEFDKASGD----VLQSLYEEL--DAPIIRKDIAVAEMIKYTCNVWHATKVTFANEIGNIAKAVGVDGREV 241          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: WECC_YERPE (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersinia pestis GN=wecC PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.963e-16
Identity = 77/252 (30.56%), Postives = 111/252 (44.05%), Query Frame = 2
Query:   89 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVK-QCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 811
            I  IG GY+G PT A  A +    +V  VD++   +   N   + I EP LD VVK    G  L   T  +     AD   ++V TP K          D+ + ESAA+ IA V K   +V+ +ST PV   E + + L      + F           I   PE +  G  + +L   DRV+  G  TP+      AL  ++     E   + TN  +AE+ KL  N+F    I+  N +S +C+  G NV
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--KKKVIGVDVNAHAVETINRGAIHIVEPDLDKVVKIAVEGGYLQAVTKPQA----ADAFLIAVPTPFK-----GDHEPDMIFVESAAKSIAPVLKKGDLVILESTSPVGATEQMAQWLAEARPDLSFPQQAGEAADINIAYCPERVLPGQVMVELIQNDRVI--GGMTPKCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICDEQGINV 240          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: WECC_SALTI (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhi GN=wecC PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.176e-16
Identity = 76/251 (30.28%), Postives = 108/251 (43.03%), Query Frame = 2
Query:   89 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 811
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK         +T       EAD   ++V TP K          D+ Y E+AA+ IA V K   +V+ +ST PV   E +   L      + F           I   PE +  G  + +L   DRV+  G  TP       AL  ++     E   + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPALGNVVKMAVEGGFLRATTTP---VEADAYLIAVPTPFK-----GDHDPDMAYVEAAAKSIAPVLKKGALVILESTSPVGATEQMAGWLAGMRPDLTFPQQAGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAEQGINV 240          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: WECC_SALTY (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmonella typhimurium GN=wecC PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.759e-16
Identity = 76/251 (30.28%), Postives = 108/251 (43.03%), Query Frame = 2
Query:   89 ICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQCRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKF----------QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 811
            I  IG GY+G PT A  A +    +V  VDI+   ++  N  ++ I EP L  VVK         +T       EAD   ++V TP K          D+ Y E+AA+ IA V K   +V+ +ST PV   E +   L      + F           I   PE +  G  + +L   DRV+  G  TP       AL  ++     E   + TN  +AE+ KL  N+F    I+  N +S +C   G NV
Sbjct:    6 ISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDIINRGEIHIVEPALGNVVKMAVEGGFLRATTTP---VEADAYLIAVPTPFK-----GDHDPDMAYVEAAAKSIAPVLKKGALVILESTSPVGATEQMAGWLAGMRTDLTFPQQAGEQADVNIAYCPERVLPGQVMVELIKNDRVI--GGMTPVCSARASALYKIFL----EGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICAEQGINV 240          
BLAST of CK938386 vs. ExPASy Swiss-Prot
Match: WECC_METJA (UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methanocaldococcus jannaschii GN=wecC PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.828e-16
Identity = 73/243 (30.04%), Postives = 115/243 (47.33%), Query Frame = 2
Query:   86 KICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRINAWNSDQLPIYEPGLDGVVKQC-RGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARVIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAVKALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANV 811
            +IC IG GY+G PT +++A++    +V  VDI+  R+           E  L  +VK      NL   T  EK    AD+  + V TP         K  DLTY   A   I    ++  +++ +ST+P  T + I K L   SK  K  +   PE +  G+ +++L   DRV IGG +    +K+ +  K++Y  +V   +I  T+  +AE+ KL  N +    I+  N  + + E  G NV
Sbjct:   12 RICVIGLGYIGLPTASMLAIQ--GFDVIGVDINEKRVKEIKELSFKTTEKDLMTLVKGAINSGNLKVQTKPEK----ADVFIICVPTPCIE--CDGEKKCDLTYLNKAIESIKPYLENGNLIIIESTIPPGTTDDIYKKL---SKDKKIYVAHCPERVLPGSILKELVENDRV-IGGVD----EKSAEMAKEIYETFV-TGKIYLTDAKTAEMVKLMENTYRDVNIALANEFAKIAEEIGINV 237          
The following BLAST results are available for this feature:
BLAST of CK938386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
ALGD_PSESY6.114e-1729.02GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
WECC_SHIFL1.043e-1632.14UDP-N-acetyl-D-mannosamine dehydrogenase OS=Shigel... [more]
WECC_ECOLI1.043e-1632.14UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escher... [more]
WECC_ECO571.043e-1632.14UDP-N-acetyl-D-mannosamine dehydrogenase OS=Escher... [more]
ALGD_PSESM1.043e-1628.63GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
ALGD_PSESH1.362e-1628.63GDP-mannose 6-dehydrogenase OS=Pseudomonas syringa... [more]
WECC_YERPE3.963e-1630.56UDP-N-acetyl-D-mannosamine dehydrogenase OS=Yersin... [more]
WECC_SALTI5.176e-1630.28UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmon... [more]
WECC_SALTY6.759e-1630.28UDP-N-acetyl-D-mannosamine dehydrogenase OS=Salmon... [more]
WECC_METJA8.828e-1630.04UDP-N-acetyl-D-mannosamine dehydrogenase OS=Methan... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_C12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938386 ID=CK938386; Name=CK938386; organism=Citrus sinensis; type=EST; length=828bp
GGGGATATCGTTGTAGAANNNGTTGTTTTGATTTTGAGAAATCGAAGCTC
ACTGAGGTTATATTGATTAGTAAAGGAAAATGGTGAAGATCTGCTGCATC
GGTGCTGGGTATGTTGGGGGGCCGACAATGGCAGTCATTGCACTGAAGTG
CCCATCCATTGAAGTGGCTGTTGTTGATATCTCTGTGTCTCGGATCAATG
CCTGGAACAGTGACCAGCTCCCCATCTATGAGCCTGGACTTGATGGTGTG
GTAAAGCAGTGCCGAGGGAAGAACCTGTTCTTCAGCACCGATGTTGAGAA
GCATGTCTCTGAGGCTGATATTGTCTTTGTTTCGGTCAATACCCCAACTA
AAACTCAGGGTCTTGGTGCTGGCAAAGCTGCAGATCTGACATACTGGGAG
AGCGCTGCTCGTGTGATTGCCGATGTGTCAAAGTCTGACAAAATTGTTGT
TGAGAAATCAACAGTTCCTGTAAAAACTGCTGAGGCAATTGAAAAAATTT
TGACCCACAACAGCAAGGGAATCAAATTCCAGATCCTTTCAAACCCGGAG
TTTCTTGCTGAGGGAACTGCAATACAGGATCTTTTTAACCCAGATCGGGT
CCTTATCGGTGGTAGAGAAACGCCAGAAGGCCAGAAAGCCGTCAAAGCCT
TGAAGGATGTGTATGCACACTGGGTCCCAGAGGACCGAATTTTGACCACC
AACCTCTGGTCTGCAGAGCTTTCGAAGCTTGCAGCCAATGCTTTCTTGGC
ACAGAGGATCTCATCTGTTAATGCCATGTCAGCTCTCTGCGAGGCAACTG
GAGCTAATGTCAGTCAGGTGGCATTTGC
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