CK938381

Overview
NameCK938381
Unique NameCK938381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.122e-42
Identity = 91/208 (43.75%), Postives = 123/208 (59.13%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK +K QIWDTAGQER+R ITS+YYRGA G  +VYDVT   +F NV++WL+E+  +    +  +L+GNKSD+     V     K FA+   + F+ET A  A+NV+ AF  +  QI   +             +  P  G        VS    GGCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHG--------VSNNSSGGCC 203          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.122e-42
Identity = 90/207 (43.48%), Postives = 127/207 (61.35%), Query Frame = 1
Query:   55 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCC 675
            YDYL K++LIGDSGVGKS LL RF+ + F+    +TIG++F  R++ ++GK IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W+R +  H   ++  MLIGNK D+     V +  GKS A++  + F+ET A  + NV+ AF  +   I     K+ ++T  +     V   G  +  + +    KK  CC
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDI----KKRMIDTPNE--QPQVVQPGTNLGANNN----KKKACC 208          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.364e-41
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   49 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAF 528
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNIVV+L GNK DL     V+  +   FA++  L F+ET AL   NV+ AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.364e-41
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   49 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAF 528
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNIVV+L GNK DL     V+  +   FA++  L F+ET AL   NV+ AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.364e-41
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   49 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAF 528
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNIVV+L GNK DL     V+  +   FA++  L F+ET AL   NV+ AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.364e-41
Identity = 82/160 (51.25%), Postives = 109/160 (68.12%), Query Frame = 1
Query:   49 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAF 528
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNIVV+L GNK DL     V+  +   FA++  L F+ET AL   NV+ AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.326e-41
Identity = 88/197 (44.67%), Postives = 129/197 (65.48%), Query Frame = 1
Query:   55 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSK-KAMETGEDGGNSAVPSKGEKIDVSK 642
            YD L K++LIGDSGVGKS LL RF  ++F+    +TIG++F  R++++  + +K Q+WDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+E W + ++ + +  + ++L+GNK DL     VSTE G++ A+K  + F+E  +    NV+  F  V T+I   V+K K  E+G  G N A   +GE+   SK
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGSGGINIA---EGEENSASK 201          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.038e-41
Identity = 82/167 (49.10%), Postives = 110/167 (65.87%), Query Frame = 1
Query:   49 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQI 549
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R    PNIV++L GNK DL     V+  +   FA++  L F+ET AL   NV+ AF +    I
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSI 169          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 8.840e-41
Identity = 83/166 (50.00%), Postives = 114/166 (68.67%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQI 549
            ++D+ FK++LIGDSGVGKS LL RF  + ++    STIGV+F  ++LN+DGK IK QIWDTAGQER+R ITS+YYRGA G +LVYD T   +F NV++W+ E+  +   N+  +L+GNK+DL +   V +   KSFAE   + F+ET A  ATNV+  F  +   I
Sbjct:    6 EHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDI 171          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.508e-40
Identity = 91/207 (43.96%), Postives = 126/207 (60.87%), Query Frame = 1
Query:   55 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCC 675
            YDYL K++LIGDSGVGKS LL RF+ + F+    +TIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G LL+YDVT   +F+NV  W   +  H   N+  +LIGNK D      VS E G++ A++  + F+E  A    NVD AF      + R + K+ ++   +  N A       +D+  D   VK+  CC
Sbjct:    6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAF----FTLAREIKKQKIDAENEFSNQA-----NNVDLGND-RTVKR--CC 200          
The following BLAST results are available for this feature:
BLAST of CK938381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_NEUCR6.122e-4243.75GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB8A_DICDI6.122e-4243.48Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB4B_RAT1.364e-4151.25Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE1.364e-4151.25Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN1.364e-4151.25Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]
RAB4B_CANFA1.364e-4151.25Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
RYL1_YARLI2.326e-4144.67Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB4B_DANRE3.038e-4149.10Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB1D_DICDI8.840e-4150.00Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
YPT2_SCHPO1.508e-4043.96GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_E08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938381 ID=CK938381; Name=CK938381; organism=Citrus sinensis; type=EST; length=751bp
GGGGGAAGATATAAGGTTGCAATAGCTATGGCTGGATACAGAGCTGAAGA
TGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCCGGTGTCG
GCAAGTCCAATTTGCTTTCTAGGTTCACTAGGAACGAGTTTAGTCTCGAG
TCTAAGTCCACAATAGGTGTTGAGTTCGCTACCCGTAGCTTGAATGTCGA
TGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAAGAAAGGT
ACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGCACTTCTA
GTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAAGGTGGTT
AAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATGCTCATTG
GTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACGGAGGACGGG
AAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTCCTGCTCT
GGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACTCAAATCT
ACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGGAGGAAAT
TCTGCTGTACCTTCCAAAGGAGAGAAAATTGATGTCAGTAAAGATGTGTC
TGCTGTGAAGAAAGGTGGCTGCTGCTCAACATAGTGGGTTGATATATTTT
TAACGGAACGAAGCGGCTATGTTAGGCTTTGTCTGTTTTCTCTTCTCCGT
T
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