CK938381

Overview
NameCK938381
Unique NameCK938381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 4.806e-71
Identity = 138/210 (65.71%), Postives = 167/210 (79.52%), Query Frame = 1
Query:   58 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKK---AMETGEDGGNSAVPSKGEKIDV-SKDVSAVKKGGCC 675
            DY+FKVVLIGDS VGKS LL+RF RNEF+L+SK+TIGVEF TR+L++D + +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  +F++V RWL ELR H D NIV+MLIGNKSDL  L  V TED K FAE+E+LFFMET ALE+TNV+NAF  VLT+IYRIVSKK   A E  +  GNS++  KG KI V  ++ +   K  CC
Sbjct:   16 DYVFKVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVSKKNLVANEEVDSSGNSSL-LKGTKIVVPGQEPAPPTKASCC 224          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11A_DICDI (Ras-related protein Rab-11A OS=Dictyostelium discoideum GN=rab11A PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.115e-70
Identity = 131/217 (60.37%), Postives = 169/217 (77.88%), Query Frame = 1
Query:   28 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDV-SKDVSAVKKGGCC 675
            M    ++++YDYL+K+VLIGDSGVGKSNLLSRFTRNEFSLE+KSTIGVEFATR++  +GK IKAQ+WDTAGQERYRAITSAYYRGAVGALLVYD+ + +T+++VERW+ ELR++ D NI +ML+GNKSDLRHL  VST++ K F+EK  L F+ET AL+++NV+ AF  +LTQIY I+S+ +  TG     + + S  E I + +       K GCC
Sbjct:    1 MTSKGSQEEYDYLYKIVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRTIQTEGKTIKAQVWDTAGQERYRAITSAYYRGAVGALLVYDIAKQATYKSVERWILELRENADRNIEIMLVGNKSDLRHLREVSTDEAKEFSEKHKLTFIETSALDSSNVELAFQNILTQIYHIMSRPSHSTGP---QTTIDSNTETIILPTTSEPPAAKSGCC 214          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.444e-69
Identity = 131/209 (62.68%), Postives = 162/209 (77.51%), Query Frame = 1
Query:   58 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGN-SAVPSKGEKIDVSKDVSAV--KKGGCC 675
            DY+FKVVLIGDS VGKS +L+RF RNEFSL+SKSTIGVEF TR+L +D K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL ELR+H D NIV++LIGNK DL +   V TED K FAEKE LFF+ET ALEATNV++AF  VLT+IY IV+KK++   E  GN ++    G+KI +      +  K+  CC
Sbjct:   15 DYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLAADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCC 223          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 5.498e-67
Identity = 130/215 (60.47%), Postives = 159/215 (73.95%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGED----GGNSAVPSKGEKIDVSKDVSAVKK---GGCC 675
            DYD LFK+VLIGDSGVGKSNLLSRFT+NEF+++SKSTIGVEFATR+L +DGK IKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ S++EN   WL ELR++ D N+ V LIGNKSDL HL AV TE+ K+FA++  L F ET AL + NVD AF E++  IY+ VSK  M+ G+       N A    G  I ++   +  KK     CC
Sbjct:    9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIDGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGNANGASAPNGPTISLTPTPNENKKANGNNCC 223          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 7.181e-67
Identity = 131/216 (60.65%), Postives = 163/216 (75.46%), Query Frame = 1
Query:   43 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKK--AMETGEDGGNSAVPSKGEKIDVSKDVSAV-KKGGCCST 681
            A    DY+FKVVLIGDS VGKS +L+RF RNEFSL+SK+TIGVEF TR+L +  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL ELR H D NIV+MLIGNK+DL    AV TED K FA+KE LFF+ET A+EATN+++AF  VLT+I+ IV+KK  A +  +  GN A    G+KI V      + +K  CCS+
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQSNGNPA-SLTGKKILVPGPGQVIPEKKACCSS 222          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.354e-65
Identity = 128/215 (59.53%), Postives = 160/215 (74.42%), Query Frame = 1
Query:   43 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPS-KGEKIDVSKDVSAVK-KGGCCST 681
            A    DY+FKVVLIGDS VGK+ +L+RF RNEFSL+SK+TIGVEF TR+L +  K +KAQIWDTAGQERYRA+TSAYYRGAVGA+LVYD+T+  TF+++ RWL ELR H D NIV+ML GNK+DL    AV TED K FA+KE LFF+ET A+EAT +++AF  VLT+I+ IV+KK +   E+  NS   S  G+KI V      +  K  CCS+
Sbjct:    8 ASQKIDYVFKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATKLEDAFLTVLTEIFNIVNKKNLAADENQSNSNPASLTGKKILVPGPGQVIPGKKACCSS 222          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPT32_YEAST (GTP-binding protein YPT32/YPT11 OS=Saccharomyces cerevisiae GN=YPT32 PE=1 SV=3)

HSP 1 Score: 246.899 bits (629), Expect = 8.778e-65
Identity = 126/215 (58.60%), Postives = 160/215 (74.42%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDG----GNSAVPSKGEKIDVS---KDVSAVKKGGCC 675
            DYDYLFK+VLIGDSGVGKSNLLSRFT +EF++ESKSTIGVEFATR++ V+ K IKAQIWDTAGQERYRAITSAYYRGAVGAL+VYD+++ S++EN   WL ELR++ D N+ V LIGNKSDL HL AV T++ K+FA +  + F ET AL + NVD AF E++  I+++VSK  ++    G    G++  P KG  I ++   K+    K   CC
Sbjct:    9 DYDYLFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFRELIVAIFQMVSKHQVDLSGSGTNNMGSNGAP-KGPTISLTPAPKEDKKKKSSNCC 222          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.024e-61
Identity = 114/175 (65.14%), Postives = 141/175 (80.57%), Query Frame = 1
Query:   58 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMET 582
            +YLFK+V+IGDS VGKSNLL+R+ RNEF+  SK+TIGVEF T+S+ +DGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR STFENV RWL EL  H+D  +  MLIGNK DL  + AVS E+GKS AE E LFFMET AL++TNV  AF  V+ +IY  +S+K + +
Sbjct:   10 EYLFKIVIIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNISRKQLNS 184          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.509e-61
Identity = 118/212 (55.66%), Postives = 156/212 (73.58%), Query Frame = 1
Query:   58 DYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKG----GCCST 681
            +YLFK+V+IGDS VGKSNLLSR+ RNEFS  SK+TIGVEF T+S+ ++GK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR +TFE+V RWL EL+ H+D  +  ML+GNK DL ++ AVS E+GK+ AE+E LFF+ET AL++TNV  AF  V+  IY  VS+K + +        V     ++ + KD ++  K      CCS+
Sbjct:   10 EYLFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTV----NRVSLVKDDNSASKQSSGFSCCSS 217          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB25_BOVIN (Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.888e-61
Identity = 121/214 (56.54%), Postives = 155/214 (72.43%), Query Frame = 1
Query:   34 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCC 675
            G RAE+DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    IKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWL+EL DH +  IVVML+GNKSDL     V TE+ + FAE   L F+ET AL++TNV+ AF  VL +I+  VSK+         N+     G      +++   +K  CC
Sbjct:    2 GNRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNNART--NAVTLGSG---PAGQELGPGEKRACC 210          
The following BLAST results are available for this feature:
BLAST of CK938381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RGP1_ORYSJ4.806e-7165.71Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11A_DICDI3.115e-7060.37Ras-related protein Rab-11A OS=Dictyostelium disco... [more]
RB11A_LOTJA3.444e-6962.68Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
YPT31_YEAST5.498e-6760.47GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11D_TOBAC7.181e-6760.65Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11C_TOBAC1.354e-6559.53Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
YPT32_YEAST8.778e-6558.60GTP-binding protein YPT32/YPT11 OS=Saccharomyces c... [more]
ARA4_ARATH2.024e-6165.14Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH4.509e-6155.66Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RAB25_BOVIN5.888e-6156.54Ras-related protein Rab-25 OS=Bos taurus GN=RAB25 ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_E08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938381 ID=CK938381; Name=CK938381; organism=Citrus sinensis; type=EST; length=751bp
GGGGGAAGATATAAGGTTGCAATAGCTATGGCTGGATACAGAGCTGAAGA
TGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCCGGTGTCG
GCAAGTCCAATTTGCTTTCTAGGTTCACTAGGAACGAGTTTAGTCTCGAG
TCTAAGTCCACAATAGGTGTTGAGTTCGCTACCCGTAGCTTGAATGTCGA
TGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAAGAAAGGT
ACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGCACTTCTA
GTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAAGGTGGTT
AAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATGCTCATTG
GTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACGGAGGACGGG
AAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTCCTGCTCT
GGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACTCAAATCT
ACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGGAGGAAAT
TCTGCTGTACCTTCCAAAGGAGAGAAAATTGATGTCAGTAAAGATGTGTC
TGCTGTGAAGAAAGGTGGCTGCTGCTCAACATAGTGGGTTGATATATTTT
TAACGGAACGAAGCGGCTATGTTAGGCTTTGTCTGTTTTCTCTTCTCCGT
T
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