CK938381

Overview
NameCK938381
Unique NameCK938381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.450e-59
Identity = 119/205 (58.05%), Postives = 151/205 (73.66%), Query Frame = 1
Query:   34 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDG----GNSAV---PSKGEK 627
            G R ++DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWL+EL DH +  IVVML+GNKSDL     V TE+   FAE   L F+ET AL++TNV+ AF  VL +I+  VSK+   +        GN+     P  GEK
Sbjct:    2 GNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQNSTRTSAITLGNAQAGQDPGPGEK 206          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59
Identity = 113/179 (63.13%), Postives = 143/179 (79.89%), Query Frame = 1
Query:   34 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKK 570
            G   E+DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWL+EL DH +  IVVML+GNKSDL     V TE+ + FAE   L F+ET AL++TNV+ AF  VL +I+  VSK+
Sbjct:    2 GNGTEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.474e-59
Identity = 111/221 (50.23%), Postives = 155/221 (70.14%), Query Frame = 1
Query:   46 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKD-----------VSAVKKGGCC 675
            E++ +YLFK+V+IGDS VGKSNLL+RFTRNEF+ ++K+TIGV+F T+S+ +D K I AQ WDTAGQER+RA+TS YYRGAVGA++VYD+T   +F+NV RWL ELR+  + +I++M++GNKSDL     V T++ ++FAE   + F+ET AL +TNV+ +F  +LT IY +VS K     +D  N  VP++G+K+    D               KK GCC
Sbjct:    4 EEEAEYLFKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQLTANTTSTHQEKKSGCC 224          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.231e-59
Identity = 113/179 (63.13%), Postives = 143/179 (79.89%), Query Frame = 1
Query:   34 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKK 570
            G   E+DY+++FKVVLIG+SGVGK+NLLSRFTRNEFS +S++TIGVEF+TR++ +    +KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWL+EL DH +  IVVML+GNKSDL     V TE+ + FAE   L F+ET AL++TNV+ AF  VL +I+  VSK+
Sbjct:    2 GNGKEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVLLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.230e-51
Identity = 94/188 (50.00%), Postives = 139/188 (73.94%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKK---AMETGEDGGNSA 606
            +YDYL K+V+IGDSGVGKSNLLSR+ +NEFS+   STIGVEF+T++L +D K+IK Q+WDTAGQE+Y +IT +YY+GA+GAL+VY++   ++F N+E+WL++ R++   +  +ML+GNKSDL+    VST +GK FAEK  + F+ET AL++ NV+ AF  +   IY  + K     ++   +G N++
Sbjct:    7 EYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAFNNLFNFIYYSLFKNKTMTLDINNNGNNNS 194          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.676e-50
Identity = 102/216 (47.22%), Postives = 133/216 (61.57%), Query Frame = 1
Query:   55 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIV---------SKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCC 675
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H +PN+ +MLIGNK DL H  AV+TE+G+ FA++  L F+ET A  A NV+ AF     +IY+ +             ++ G  GGN+     G +     +  A K   CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNA-----GPQTVKPGEGGAAKSSSCC 213          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.977e-50
Identity = 103/220 (46.82%), Postives = 132/220 (60.00%), Query Frame = 1
Query:   55 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVS-------------KKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCC 675
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H +PN+ +MLIGNK DL H  AV+TE+G+ FA++  L F+ET A  A NV+ AF     +IY+ +              K     G  G  +A P +G+         A K   CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGEGD---------ARKSSSCC 213          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.377e-48
Identity = 102/216 (47.22%), Postives = 131/216 (60.65%), Query Frame = 1
Query:   55 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMET-GEDGGNSAVPSKGEKIDV--------SKDVSAVKKGGCC 675
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H+  N+V+MLIGNKSDL     V  E+G++FA +  L FMET A  A NV+ AF     +IYR + +   +   E  G    P +     V        S+D+ +    GCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGS--NSGCC 216          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.751e-48
Identity = 99/214 (46.26%), Postives = 131/214 (61.21%), Query Frame = 1
Query:   55 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGED------GGNSAVPSKGEKIDVSKDVSAV-KKGGCC 675
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H+  N+V+MLIGNKSDL     V  E+G++FA +  L FMET A  A NV+ A+     +IYR + +   +   +      G   ++ S        ++VS +    GCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSITSSVGPCSPQQNVSDIGPDSGCC 216          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.274e-47
Identity = 99/210 (47.14%), Postives = 126/210 (60.00%), Query Frame = 1
Query:   55 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAME-TGEDGGNSAVPSKG--EKIDVSKDVSAVKKGGCC 675
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMET A  A+NV+ AF     +IY  + +   +   E  G    P  G                GGCC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHGATNATHAGNQGGQQAGGGCC 212          
The following BLAST results are available for this feature:
BLAST of CK938381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB25_MOUSE1.450e-5958.05Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RAB25_HUMAN1.894e-5963.13Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RB11C_DICDI2.474e-5950.23Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB25_RABIT3.231e-5963.13Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RB11B_DICDI4.230e-5150.00Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
YPTC4_CHLRE4.676e-5047.22GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
YPTV4_VOLCA7.977e-5046.82GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RAB2B_HUMAN4.377e-4847.22Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2B_MOUSE9.751e-4846.26Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_RABIT1.274e-4747.14Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_E08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938381 ID=CK938381; Name=CK938381; organism=Citrus sinensis; type=EST; length=751bp
GGGGGAAGATATAAGGTTGCAATAGCTATGGCTGGATACAGAGCTGAAGA
TGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCCGGTGTCG
GCAAGTCCAATTTGCTTTCTAGGTTCACTAGGAACGAGTTTAGTCTCGAG
TCTAAGTCCACAATAGGTGTTGAGTTCGCTACCCGTAGCTTGAATGTCGA
TGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAAGAAAGGT
ACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGCACTTCTA
GTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAAGGTGGTT
AAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATGCTCATTG
GTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACGGAGGACGGG
AAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTCCTGCTCT
GGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACTCAAATCT
ACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGGAGGAAAT
TCTGCTGTACCTTCCAAAGGAGAGAAAATTGATGTCAGTAAAGATGTGTC
TGCTGTGAAGAAAGGTGGCTGCTGCTCAACATAGTGGGTTGATATATTTT
TAACGGAACGAAGCGGCTATGTTAGGCTTTGTCTGTTTTCTCTTCTCCGT
T
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