CK938381

Overview
NameCK938381
Unique NameCK938381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 100/208 (48.08%), Postives = 133/208 (63.94%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCC 675
            DYDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +L+GNKSDL     V     K +A++  + F+ET A  ATNV+ AF   +T    I ++    T       +V     KI+ S  VSA  KGGCC
Sbjct:    7 DYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAF---MTMAAEIKNRMGPITAASDSKPSV-----KINSSTPVSA-NKGGCC 205          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 100/210 (47.62%), Postives = 132/210 (62.86%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKK--GGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +L+GNK DL     V     K FA+   + F+ET A  ATNV+ AF  +  +I     KK M  G   G S      EK +V+   + VK   GGCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGATSGGS------EKSNVNIQSTPVKSSGGGCC 202          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 99/210 (47.14%), Postives = 133/210 (63.33%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKK--GGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ET A  ATNV+ AF  +  +I     KK M  G   G       GE+ ++  D + VK   GGCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASG-------GERPNLKIDSTPVKPAGGGCC 201          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 99/210 (47.14%), Postives = 133/210 (63.33%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVK--KGGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ET A  ATNV+ AF  +  +I     KK M  G   G       GE+ ++  D + VK   GGCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASG-------GERPNLKIDSTPVKPASGGCC 201          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 99/210 (47.14%), Postives = 133/210 (63.33%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKK--GGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ET A  ATNV+ AF  +  +I     KK M  G   G       GE+ ++  D + VK   GGCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASG-------GERPNLKIDSTPVKPAGGGCC 201          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 99/210 (47.14%), Postives = 133/210 (63.33%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKK--GGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ET A  ATNV+ AF  +  +I     KK M  G   G       GE+ ++  D + VK   GGCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASG-------GERPNLKIDSTPVKPAGGGCC 201          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 98/210 (46.67%), Postives = 133/210 (63.33%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVK--KGGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER+R +TS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ET A  ATNV+ AF  +  +I     KK M  G   G       GE+ ++  D + VK   GGCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASG-------GERPNLKIDSTPVKSASGGCC 201          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 96/208 (46.15%), Postives = 134/208 (64.42%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKKGGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGKVIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL E+  +   N+  +L+GNKSDL     V     K+FA++  + F+ET A  ATNV+ AF  +  +I   ++ + + T + GG    P +G+ I+        K   CC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPT-KAGGPVVRPQEGKPIN-------SKSSSCC 203          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 90/187 (48.13%), Postives = 121/187 (64.71%), Query Frame = 1
Query:   40 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGN 600
            R    Y++LFK +++GDS VGKSNLL +F    F+  S  TIGVEF +RS+N++ K IK QIWDTAGQE++R+IT AYYRGAV A++VYD+TR  +FE++  WL + R  +  ++  +LIGNK+DL     VST + K FAEK  L F ET A  A NVD AF +   QI + +         +G N
Sbjct:   16 RKSTSYEHLFKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGSRSININDKQIKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKLESNPGLLSNEGNN 202          
BLAST of CK938381 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.318e-44
Identity = 99/210 (47.14%), Postives = 133/210 (63.33%), Query Frame = 1
Query:   52 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETPALEATNVDNAFAEVLTQIYRIVSKKAMETGEDGGNSAVPSKGEKIDVSKDVSAVKK--GGCC 675
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ET A  ATNV+ AF  +  +I     KK M  G   G       GE+ ++  D + VK+  GGCC
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI-----KKRMGPGAASG-------GERPNLKIDSTPVKQAGGGCC 201          
The following BLAST results are available for this feature:
BLAST of CK938381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_LYMST3.468e-4548.08Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB1_DISOM4.529e-4547.62Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1B_PONAB4.529e-4547.14Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_MOUSE4.529e-4547.14Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_MACFA4.529e-4547.14Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_HUMAN4.529e-4547.14Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_RAT5.916e-4546.67Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
YPTC1_CHLRE7.726e-4546.15GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB2B_DICDI7.726e-4548.13Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAB1B_PIG1.318e-4447.14Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_E08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938381 ID=CK938381; Name=CK938381; organism=Citrus sinensis; type=EST; length=751bp
GGGGGAAGATATAAGGTTGCAATAGCTATGGCTGGATACAGAGCTGAAGA
TGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCCGGTGTCG
GCAAGTCCAATTTGCTTTCTAGGTTCACTAGGAACGAGTTTAGTCTCGAG
TCTAAGTCCACAATAGGTGTTGAGTTCGCTACCCGTAGCTTGAATGTCGA
TGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAAGAAAGGT
ACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGCACTTCTA
GTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAAGGTGGTT
AAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATGCTCATTG
GTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACGGAGGACGGG
AAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTCCTGCTCT
GGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACTCAAATCT
ACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGGAGGAAAT
TCTGCTGTACCTTCCAAAGGAGAGAAAATTGATGTCAGTAAAGATGTGTC
TGCTGTGAAGAAAGGTGGCTGCTGCTCAACATAGTGGGTTGATATATTTT
TAACGGAACGAAGCGGCTATGTTAGGCTTTGTCTGTTTTCTCTTCTCCGT
T
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