CX675487

Overview
NameCX675487
Unique NameCX675487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.897e-42
Identity = 86/174 (49.43%), Postives = 111/174 (63.79%), Query Frame = 1
Query:   58 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            +RKFFVGGNWK NG  + + +++ TLN A+                     K  L     VAAQNC+    GAFTGE+S  M+ +    WV+LGHSERR +  ES++ +G KVA+AL++GL VIAC+GE L++RE+G T  VV EQTK I + + DW  VVLAYEPVWAIGTGK
Sbjct:    4 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTKVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGK 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.783e-42
Identity = 86/173 (49.71%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            RKFFVGGNWK NG  + + ++++TLN  +                     K  L +   ++AQNC+    GAFTGE+S  M+ +    WVILGHSERR +  E ++ +G KVA+ALS+G+ VIAC+GE L+QRE+G T  VV EQTKAIA+ + DW  VVLAYEPVWAIGTGK
Sbjct:    4 RKFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPAIYLDFARQK--LDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGK 174          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 4.941e-42
Identity = 87/173 (50.29%), Postives = 111/173 (64.16%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            RKFFVGGNWK NG  + + +++ TLN A                      K  L     VAAQNC+    GAFTGE+S  M+ +L   WV+LGHSERR +  ES++ +G KV++AL++GL VIAC+GE L++RE+G T  VV EQTK IA+ + DW  VVLAYEPVWAIGTGK
Sbjct:    5 RKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCAPPTAYIDFARQK--LDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGK 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.941e-42
Identity = 85/173 (49.13%), Postives = 112/173 (64.74%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            RKFFVGGNWK NG  + + +++ TLN A+                     K  +   F VAAQNC+    GAFTGE+S  M+ +  + WVILGHSERR +  ES++ +G KV++ALS+GL V+AC+GE L++RE+G T  VV E T+ IA+ + DW  VVLAYEPVWAIGTGK
Sbjct:    3 RKFFVGGNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEAYLDFARLK--VDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGK 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.438e-41
Identity = 86/178 (48.31%), Postives = 114/178 (64.04%), Query Frame = 1
Query:   58 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK---ISDWDNVVLAYEPVWAIGTGKV 582
            +RKFFVGGNWK NG+  + K ++ +L++A                      +  L  + HVAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR++ NES++ V +KV +AL++GL V+AC+GETL +RESG T  V   Q  AIA K   I +W  VV+AYEPVWAIGTGKV
Sbjct:    4 SRKFFVGGNWKMNGSRADNKVLIHSLSEAHFCGDTEILIAAPFVYLNEV--RQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKV 179          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.183e-41
Identity = 86/175 (49.14%), Postives = 112/175 (64.00%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            M+RKF VGGNWK NG  + + +I  TL+ A                      +++L  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL++GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI DW NVV+AYEPVWAIGTGK
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGK 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.183e-41
Identity = 86/175 (49.14%), Postives = 112/175 (64.00%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            M+RKF VGGNWK NG  + + +I  TL+ A                      +++L  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL++GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI DW NVV+AYEPVWAIGTGK
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGK 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.463e-41
Identity = 82/174 (47.13%), Postives = 111/174 (63.79%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTG 576
            MAR+FFVGGN+K NGT E V KIV  LN+AE                     ++  ++   V+AQNC+ +  GA+TGE+S E + +L   W + GHSERR ++ ES+DF+  K  +AL QGL VI C+GETLE+R++  T+ V A Q  A+A  +SDW  +V+AYEPVWAIGTG
Sbjct:    1 MARQFFVGGNFKMNGTRESVSKIVDGLNKAELPSNVEVVIAPPAPYIALAVNENKQKT-IEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGETLEERKANVTLDVCARQLDAVARVVSDWSKIVVAYEPVWAIGTG 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.135e-41
Identity = 85/178 (47.75%), Postives = 113/178 (63.48%), Query Frame = 1
Query:   58 ARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI---SDWDNVVLAYEPVWAIGTGKV 582
            +RKFFVGGNWK NG+ ++  K++  L++A                      +  L+ + HVAAQNC+    GAFTGE+S  M+ ++   WVILGHSERR +  ES++ + +KV +AL++GL VIAC+GETL +RES  T  V   Q KAIA KI    +W  VV+AYEPVWAIGTGKV
Sbjct:    4 SRKFFVGGNWKMNGSRDDNDKLLKLLSEAHFDDNTEVLIAPPSVFLHEI--RKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKV 179          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 166.007 bits (419), Expect = 1.217e-40
Identity = 82/175 (46.86%), Postives = 111/175 (63.43%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            MARKFFVGGN+K NG+ E +K I+  LN  +                     + V + D  V AQN + +K GA+TGE SA+ L++  I + + GHSERR +  ES++FV DK  +AL QGL V+AC+GETL +RE+  T+ VV  Q  AIA+K+ +W  +V+AYEPVWAIGTGK
Sbjct:    1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQV-KKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGK 174          
The following BLAST results are available for this feature:
BLAST of CX675487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_GORGO2.897e-4249.43Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_XENLA3.783e-4249.71Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_MOUSE4.941e-4250.29Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_LATCH4.941e-4249.13Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_SCHJA1.438e-4148.31Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_DROYA4.183e-4149.14Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI4.183e-4149.14Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_DEBHA5.463e-4147.13Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_SCHMA7.135e-4147.75Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_SCHPO1.217e-4046.86Triosephosphate isomerase OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675487 ID=CX675487; Name=CX675487; organism=Citrus sinensis; type=EST; length=582bp
CTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGT
CGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGA
CATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTT
CCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCT
TCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAA
ATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAG
ATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAG
AAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTT
ATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTG
GAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAA
AGCAATCGCAGAAAAAATATCCGACTGGGACAATGTTGTGTTGGCTTATG
AGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
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