CX675487

Overview
NameCX675487
Unique NameCX675487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 166.007 bits (419), Expect = 1.217e-40
Identity = 85/175 (48.57%), Postives = 112/175 (64.00%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            M+RKF VGGNWK NG  + + +I  TL+ A                      +++L  +  +A QN +    GAFTGE+S  ML ++   WVILGHSERRA+  ES+  + +K  +AL++GLKVIAC+GETLE+RE+G T  VVA Q  A A+KI DW NVV+AYEPVWAIGTG+
Sbjct:    1 MSRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYA--RNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQ 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.076e-40
Identity = 83/176 (47.16%), Postives = 114/176 (64.77%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            MARKFFVGGN+K NGT +++K IV  LN A+                     +++ + +  VAAQN + +  GAFTGE+SA  L++L + WVILGHSERR  L ES++F+  K  YAL  G+ VI C GE+ + R++G T+  V  Q  A+A++I+DW NVV+AYEP+WAIGTG V
Sbjct:    1 MARKFFVGGNFKMNGTRKDLKAIVDNLNNAQLDPNAEVVIAPPALYLDFVK-QNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLV 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 81/174 (46.55%), Postives = 110/174 (63.22%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTG 576
            MAR FFVGGN+K NGT   +K+IV  LN A+                       V +S   V AQN +++  GAFTGE S + + ++   WVILGHSERR    E +  + +K A+ALSQG+ VI C+GETL+Q+++G+T+ VV  Q +A+ +K+ DW NVV+AYEPVWAIGTG
Sbjct:    1 MARTFFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTV-SLVKKSQVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGETLDQKKAGTTLQVVERQLQAVIDKVKDWSNVVIAYEPVWAIGTG 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 80/174 (45.98%), Postives = 110/174 (63.22%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTG 576
            MAR FF+GGN+K NGT   +K+IV  LN A                       +  ++   VAAQN +++  GAFTGE S E + ++   WVILGHSERR   +E+++F+ DK  +AL  G+KVI C+GETLE+++ G T+ VV  Q +A+ +K+ DW NVV+AYEPVWAIGTG
Sbjct:    1 MARTFFIGGNFKMNGTKASIKEIVERLNSASIPSNVEVVIAPPAAYLDHAVSLNK-KAQVSVAAQNAYLKASGAFTGENSVEQIKDVGAEWVILGHSERRTYFHETDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTG 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.541e-40
Identity = 79/123 (64.23%), Postives = 98/123 (79.67%), Query Frame = 1
Query:  211 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES++ + DKVA+AL++GLKVIAC+GETL++RE+G T AV   QTKAIA+K+ DW NVV+AYEPVWAIGTGK
Sbjct:   33 RSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGK 155          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.722e-39
Identity = 76/123 (61.79%), Postives = 95/123 (77.24%), Query Frame = 1
Query:  211 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            +S L     VAAQNC+    GAFTGE+S  ML +L+I WVILGHSERRA+  ES + + DK+ +AL++GLKVIAC+GETL++RE+  T AV   QTKAIA+K+ DW NVV+AYEPVWAIGTGK
Sbjct:   33 RSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGK 155          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.139e-38
Identity = 79/174 (45.40%), Postives = 108/174 (62.07%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTG 576
            MAR FFVGGN+K NG+ + +K+IV  LN A                        V +    V AQN +++  GAFTGE S + + ++   WVILGHSERR+  +E + F+ DK  +AL QG+ VI C+GETLE++++G T+ VV  Q  A+ E++ DW NVV+AYEPVWAIGTG
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSV-SLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTG 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.139e-38
Identity = 82/170 (48.24%), Postives = 106/170 (62.35%), Query Frame = 1
Query:   82 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERR--ALLNESNDFVGDKVAYALSQG-LKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGKV 582
            NWKCN +  ++ ++VS  N A                      +  LR+DF  +AQN W+ KGGAFTGE+ A M+ ++   WVILGHSERR  A L ES+  +  K AYAL    L VI C+GE LE+RESG T+AV   Q +A+++ ISDW +VV+AYEPVWAIGTGKV
Sbjct:    1 NWKCNLSKADIAELVSAFNAAPPIDAAHVQVVVAPPAVYLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKV 170          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.488e-38
Identity = 75/123 (60.98%), Postives = 96/123 (78.05%), Query Frame = 1
Query:  211 KSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            +S+L     VAAQNC+    GAFTGE+S  ML +L + WVILGHSERRA+  E+++ + +KVA+AL +GLKVIAC+GETL++RE+G T AV   QTKAIA ++ DW NVV+AYEPVWAIGTGK
Sbjct:   33 RSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGETLQEREAGQTEAVCFRQTKAIAAQVKDWSNVVIAYEPVWAIGTGK 155          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.538e-38
Identity = 83/175 (47.43%), Postives = 107/175 (61.14%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            M RKFFVGGNWK NG    V  IV+ LN +                      KS L++   VAAQNC+    GAFTGE+S  M+ +L + WVILGHSERR +  ES+  + +K  +AL  G+KV+ C+GE LE+RE+G T  V   Q +AI +K   W+N+V+AYEPVWAIGTGK
Sbjct:    1 MTRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYA--KSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGK 173          
The following BLAST results are available for this feature:
BLAST of CX675487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_DROME1.217e-4048.57Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_NEUCR2.076e-4047.16Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_ZYGBA3.541e-4046.55Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_KLUMA3.541e-4045.98Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_AEDTO3.541e-4064.23Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_CULPI8.722e-3961.79Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_YEAST1.139e-3845.40Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_GRAVE1.139e-3848.24Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ANOME1.488e-3860.98Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_CAEEL2.538e-3847.43Triosephosphate isomerase OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675487 ID=CX675487; Name=CX675487; organism=Citrus sinensis; type=EST; length=582bp
CTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGT
CGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGA
CATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTT
CCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCT
TCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAA
ATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAG
ATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAG
AAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTT
ATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTG
GAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAA
AGCAATCGCAGAAAAAATATCCGACTGGGACAATGTTGTGTTGGCTTATG
AGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
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