CX675487

Overview
NameCX675487
Unique NameCX675487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_BLOFL (Triosephosphate isomerase OS=Blochmannia floridanus GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.071e-20
Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 1
Query:   82 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRS----DFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE--KISDWDNVVLAYEPVWAIGTG 576
            NWK NG    +   +  L                         K+ L S       + +QN  +   GAFTG++SA ML +LS+ +V++GHSERR    E+N  +  K +      L  I C+GE  E+R+SGST ++  +Q  +I +   I  ++N ++AYEPVWAIG+G
Sbjct:    9 NWKLNGNKNTITNSLINLTTQLTNIPQYIKIAIAPPILYIDMVKNHLTSYNNKTIELCSQNVDIHLSGAFTGDISASMLKDLSVKYVLIGHSERRIYHKENNSLIAQKFSIIKQTELIPILCIGENKEERDSGSTQSICIQQIDSIIKLVGIKAFENTIIAYEPVWAIGSG 179          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_RUBXD (Triosephosphate isomerase OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTL-NQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISD--WDNVVLAYEPVWAIGTGK 579
            R+  +  NWK N T  E +  ++ L  +                       +    S     AQN +    GA+TGEVSA ML+++     I+GHSERR L  E+++ V  K   A+  GL  + CVGET E+R++G     V+ Q +A+ E + D     VV AYEP+WAIGTGK
Sbjct:    5 RRPLMAANWKMNKTVREAQDYMAALLPRVADLAGEVDVAVFAPFTCLSEVARMAEGSGVLAGAQNFFYEDSGAYTGEVSAPMLLDVGARASIVGHSERRELFCETDESVARKARRAVEAGLLPVVCVGETEEERDAGRMWEKVSGQVRAVVEGLGDASGGRVVFAYEPIWAIGTGK 180          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_RALEJ (Triosephosphate isomerase OS=Ralstonia eutropha (strain JMP134) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 56/114 (49.12%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  244 AQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--DWDNVVLAYEPVWAIGTGK 579
            AQ+      GAFTGEV+A ML      + ++GHSERR    ES+  V  K   AL  G+  + CVGETL QRE+G T  VV  Q +A  + +S      VVLAYEPVWAIGTGK
Sbjct:   60 AQDVSAEARGAFTGEVAASMLGEFGCTYALVGHSERRTYHGESDAVVAAKALRALEFGIIPVICVGETLAQREAGETEVVVGRQLQAALDALSVEQLGRVVLAYEPVWAIGTGK 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_PSESM (Triosephosphate isomerase OS=Pseudomonas syringae pv. tomato GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 58/175 (33.14%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVR-KGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISDWDNVVLAYEPVWAIGTG 576
            R+  V GNWK +GT   V +++  L + +                     + +  +   V AQ+  ++ + GA TGE+++  L +     V++GHSERR L+ E ++ +  K A   + GL  + C+GETLE+R++G T+ VV  Q  ++  +  I    N V+AYEPVWAIGTG
Sbjct:    2 RRPMVAGNWKMHGTRASVAELIEGLVK-QALPGSVDIAVMPASLFTSRVIEGLQGTSIIVGAQDAAIQAEQGALTGEIASSQLADAGCKLVLVGHSERRQLIGEQDEVLNKKFAAIQASGLTPVLCIGETLEERKAGQTLEVVGRQLDSVIAEFGIGALVNAVIAYEPVWAIGTG 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_NOSP7 (Triosephosphate isomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 62/175 (35.43%), Postives = 92/175 (52.57%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVST-LNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQ-TKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            RK  + GNWK   T  E ++ +   L   E                     K++  S   + AQN    + GA+TGE+S  ML    + +VI+GHSERR    E++  V  ++  A   GL  I CVGET +QR++G T +++A Q  K + +   D +N+V+AYEP+WAIGTG+
Sbjct:    2 RKIVIAGNWKMFKTQAETQEFLQGFLPHLEETPQGREVILCPPFTDLSVLSKTLHGSLIQLGAQNIHWEEFGAYTGEISGPMLTESGVRFVIVGHSERRQYFGETDATVNLRLRTAQRFGLTPILCVGETKQQRDAGETESLIALQLDKGLVD--IDQNNLVIAYEPIWAIGTGE 174          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTU (Triosephosphate isomerase OS=Mycobacterium tuberculosis GN=tpiA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 68/185 (36.76%), Postives = 90/185 (48.65%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISDWDNVVLAYEPVWAIGTGKV 582
            M+RK  + GNWK N    E    V+KI  +L                             +      AQ+      GA+TG+VS   L  L   +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ RE+G+ VA   EQ +      +AE+I    +VV+AYEPVWAIGTG+V
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIG---SVVIAYEPVWAIGTGRV 182          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTA (Triosephosphate isomerase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 68/185 (36.76%), Postives = 90/185 (48.65%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISDWDNVVLAYEPVWAIGTGKV 582
            M+RK  + GNWK N    E    V+KI  +L                             +      AQ+      GA+TG+VS   L  L   +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ RE+G+ VA   EQ +      +AE+I    +VV+AYEPVWAIGTG+V
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIG---SVVIAYEPVWAIGTGRV 182          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBO (Triosephosphate isomerase OS=Mycobacterium bovis GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.399e-20
Identity = 68/185 (36.76%), Postives = 90/185 (48.65%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKA-----IAEKISDWDNVVLAYEPVWAIGTGKV 582
            M+RK  + GNWK N    E    V+KI  +L                             +      AQ+      GA+TG+VS   L  L   +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ RE+G+ VA   EQ +      +AE+I    +VV+AYEPVWAIGTG+V
Sbjct:    1 MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIG---SVVIAYEPVWAIGTGRV 182          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_NOCFA (Triosephosphate isomerase OS=Nocardia farcinica GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.827e-20
Identity = 67/182 (36.81%), Postives = 90/182 (49.45%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQA-EXXXXXXXXXXXXXXXXXXXXXKSVLRSD---FHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--DWDNVVLAYEPVWAIGTGKV 582
            MARK  + GNWK N    E   +V  +  A                       ++++  D       AQ+  V + GA+TGE+SA ML  L   +V++GHSERR   +E +  V  K   AL  GL  I C+GE L  RE+G+ V    EQ +   + +S      VV+AYEPVWAIGTGKV
Sbjct:    1 MARKPLIAGNWKMNLNHLEAIALVQKIAFALPEKYFEKVDVAVIPPFVDIRSVQTLVEGDKLLLTYGAQDVSVHESGAYTGEISASMLAKLGCTFVVVGHSERRQYHHEDDATVLGKAKKALEHGLTPIVCIGEGLNVREAGTHVEYNLEQLRGSLKGLSAEQIAKVVIAYEPVWAIGTGKV 182          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_MORSP (Triosephosphate isomerase OS=Moraxella sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.827e-20
Identity = 52/112 (46.43%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  271 GAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDW--------DNVVLAYEPVWAIGTGKV 582
            GA+TGE SA+ +V+    W ILGHSERR    ESND +  K+ +ALSQ L V+ C+GE+ EQ ++  T+ V+  Q   I E I+            +++AYEPVWAIGTGKV
Sbjct:   82 GAYTGECSAQQIVDAGATWTILGHSERRQYHQESNDALLQKMIHALSQDLGVVFCIGESQEQYDTKQTLTVIDNQLVVIKEFITQQPELIDALPTRLIIAYEPVWAIGTGKV 193          
The following BLAST results are available for this feature:
BLAST of CX675487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BLOFL1.071e-2033.33Triosephosphate isomerase OS=Blochmannia floridanu... [more]
TPIS_RUBXD1.399e-2035.23Triosephosphate isomerase OS=Rubrobacter xylanophi... [more]
TPIS_RALEJ1.399e-2049.12Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_PSESM1.399e-2033.14Triosephosphate isomerase OS=Pseudomonas syringae ... [more]
TPIS_NOSP71.399e-2035.43Triosephosphate isomerase OS=Nostoc punctiforme (s... [more]
TPIS_MYCTU1.399e-2036.76Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCTA1.399e-2036.76Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCBO1.399e-2036.76Triosephosphate isomerase OS=Mycobacterium bovis G... [more]
TPIS_NOCFA1.827e-2036.81Triosephosphate isomerase OS=Nocardia farcinica GN... [more]
TPIS_MORSP1.827e-2046.43Triosephosphate isomerase OS=Moraxella sp. GN=tpiA... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675487 ID=CX675487; Name=CX675487; organism=Citrus sinensis; type=EST; length=582bp
CTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGT
CGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGA
CATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTT
CCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCT
TCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAA
ATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAG
ATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAG
AAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTT
ATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTG
GAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAA
AGCAATCGCAGAAAAAATATCCGACTGGGACAATGTTGTGTTGGCTTATG
AGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
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