CX675487

Overview
NameCX675487
Unique NameCX675487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_HELVI (Triosephosphate isomerase (Fragment) OS=Heliothis virescens GN=Tpi PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.051e-36
Identity = 81/163 (49.69%), Postives = 101/163 (61.96%), Query Frame = 1
Query:   94 NGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI-SDWDNVVLAYEPVWAIGTGK 579
            NG  ++V  IV TL +                       +S++     VAAQNCW    GAFTGE+S  M+ ++   WVILGHSERR +  E +D V +KVA+AL  GLKVIAC+GETLE+RE+G T  VV  QTKA+   I ++W NVVLAYEPVWAIGTGK
Sbjct:    2 NGDKKQVTDIVETLKKGPLDPNVEVVIGVPAIYLAYV--QSIVPGTISVAAQNCWKVAKGAFTGEISPAMIKDIGANWVILGHSERRTIFGEKDDLVAEKVAHALENGLKVIACIGETLEEREAGKTEEVVFRQTKALLPAIGNNWANVVLAYEPVWAIGTGK 162          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.540e-35
Identity = 77/169 (45.56%), Postives = 103/169 (60.95%), Query Frame = 1
Query:   82 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SDWDNVVLAYEPVWAIGTGKV 582
            NWKCNG+ + + +++   N                        + +    F +AAQN  + K GAFTGEVS  +L +  + W++LGHSERRA   E+N+ V DKVA A++ G  VIAC+GETL++RESG T  VV  Q  AIA+K+  +DW  VV+AYEPVWAIGTGKV
Sbjct:   11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVHLAMTKER-LSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKV 177          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_PLAFA (Triosephosphate isomerase OS=Plasmodium falciparum GN=TPI PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.430e-35
Identity = 74/175 (42.29%), Postives = 106/175 (60.57%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            MARK+FV  NWKCNGT E +K + ++ N  +                     K +L+S F    QN      G++TGEVSAE+  +L+I +VI+GH ERR   +E+++ V +K+  +L   LK + C GE+LEQRE   T+ V+ +Q KA  + I ++DNV+LAYEP+WAIGTGK
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRK-LLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGK 174          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.430e-35
Identity = 74/175 (42.29%), Postives = 106/175 (60.57%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            MARK+FV  NWKCNGT E +K + ++ N  +                     K +L+S F    QN      G++TGEVSAE+  +L+I +VI+GH ERR   +E+++ V +K+  +L   LK + C GE+LEQRE   T+ V+ +Q KA  + I ++DNV+LAYEP+WAIGTGK
Sbjct:    1 MARKYFVAANWKCNGTLESIKSLTNSFNNLDFDPSKLDVVVFPVSVHYDHTRK-LLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGK 174          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.641e-35
Identity = 78/169 (46.15%), Postives = 102/169 (60.36%), Query Frame = 1
Query:   82 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISD--WDNVVLAYEPVWAIGTGKV 582
            NWKCNGT+  ++K+V   N  E                     ++ LR+  +V +    + K GAFTGEVS  +L ++ + WVILGHSERR    E+++ V  KV+ A  QG  VIAC+GETL+QRE+  T  VV  QT AIA K++   W+ VVLAYEPVWAIGTGKV
Sbjct:   12 NWKCNGTTASIEKLVQVFN--EHTISHDVQCVVAPTFVHIPLVQAKLRNPKYVISAENAIAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKV 178          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_TRYCR (Triosephosphate isomerase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.223e-34
Identity = 78/169 (46.15%), Postives = 101/169 (59.76%), Query Frame = 1
Query:   82 NWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISD--WDNVVLAYEPVWAIGTGKV 582
            NWKCNG+   +  ++ TLN A                      + +    F +AAQN  + + GAFTGEVS ++L +  I WV+LGHSERR    E+N+ V +KVA A + G  VI CVGET E+RE+G T AVV  Q  A+A+K+S   W  VV+AYEPVWAIGTGKV
Sbjct:   12 NWKCNGSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKAR-LTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWAIGTGKV 178          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.223e-34
Identity = 82/182 (45.05%), Postives = 107/182 (58.79%), Query Frame = 1
Query:   58 ARKFFVGGNWKCNGTSEEVKKIVSTLNQA-EXXXXXXXXXXXXXXXXXXXXXKSVLRSDFH-----VAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISD--WDNVVLAYEPVWAIGTGK 579
            A KF VGGNWKCNGT   ++ +   +  + +                     + +L  + +     V+A+N W  K GA+TGEV   MLV+  +P+VILGHSERR + +ESN+ V +KV  A+  GLKVIAC+GET  QR +  T  VVA Q KAI   IS   W N++LAYEPVWAIGTGK
Sbjct:    3 AGKFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAWT-KSGAYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGK 183          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.340e-33
Identity = 73/175 (41.71%), Postives = 102/175 (58.29%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAE-KISDWDNVVLAYEPVWAIGTGKV 582
            R FFVGGN K NG+   ++ +   +N++                        +    F V +QNC+    GAFTGE+SA MLV+L IP+VI+GHSERR + +ES++ +  K  YA+S GL VI C+GE L  R+S +T  +++EQ K  A     +W  +V+AYEPVWAIGTG V
Sbjct:    5 RTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIAPSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAISLGLTVILCLGELLADRKSNNTEHILSEQLKDFASFTPEEWSKIVIAYEPVWAIGTGAV 179          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.947e-30
Identity = 74/174 (42.53%), Postives = 96/174 (55.17%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGT-SEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            R+  V GNWK N T +E ++   +   +                       K++  S   +AAQNC     GAFTGEVS  ML      +VILGHSERR L  E+N+ V  KV  AL++GL+VI CVGETL++RE+G T  +V  Q       +SD   +V+AYEPVWAIGTGK
Sbjct:    2 RRTIVVGNWKMNNTIAESIELATAIAEKVGATKPECEVGIAPTFPALHEVGKTIEWSGVQLAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLADVSDISTLVIAYEPVWAIGTGK 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.262e-29
Identity = 76/174 (43.68%), Postives = 94/174 (54.02%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTL-NQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWDNVVLAYEPVWAIGTGK 579
            RK  V GNWK N T  E  ++ S + +Q                         +  +  H+AAQNC     GAFTGEVS  ML      +VI+GHSERR    ++N  V  KV  ALS GL VI CVGETL++RE G T  VV  Q K   E ++D  ++V+AYEPVWAIGTGK
Sbjct:    2 RKKIVVGNWKMNKTIAEAVELSSAIIDQLGEVSASCEVGIAPAFPALSGVHGVISGTGIHLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGK 175          
The following BLAST results are available for this feature:
BLAST of CX675487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HELVI4.051e-3649.69Triosephosphate isomerase (Fragment) OS=Heliothis ... [more]
TPIS_TRYBB1.540e-3545.56Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_PLAFA3.430e-3542.29Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_PLAF73.430e-3542.29Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_LEIME7.641e-3546.15Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_TRYCR2.223e-3446.15Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_ENTHI2.223e-3445.05Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPIS_DICDI9.340e-3341.71Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_CHLP81.947e-3042.53Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_PROA21.262e-2943.68Triosephosphate isomerase OS=Prosthecochloris aest... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675487 ID=CX675487; Name=CX675487; organism=Citrus sinensis; type=EST; length=582bp
CTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGT
CGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGA
CATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTT
CCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCT
TCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAA
ATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAG
ATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAG
AAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTT
ATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTG
GAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAA
AGCAATCGCAGAAAAAATATCCGACTGGGACAATGTTGTGTTGGCTTATG
AGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
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