CX675487

Overview
NameCX675487
Unique NameCX675487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_TREDE (Triosephosphate isomerase OS=Treponema denticola GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 71/176 (40.34%), Postives = 97/176 (55.11%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLR-SDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--DWDNVVLAYEPVWAIGTGK 579
            +KF++  NWK N    E K++ + +                          SVL+ S+  + AQN  + + GA TGEVS   L+++ +  VILGHSERR +  E++D +  KV  AL  GL+VI CVGE LE+RE+G   AV   Q K    ++S  D D V +AYEPVWAIGTGK
Sbjct:    2 KKFYIAANWKMNMNRAEAKQLATEMKAG--LKDGKNKYMIAPSFTLLQDVASVLKGSNILLGAQNMGLEEKGAHTGEVSVLQLLDVGVQAVILGHSERRHIYKETDDLINKKVKLALKHGLEVILCVGELLEEREAGHAEAVCERQIKKGLAEVSAKDLDKVTIAYEPVWAIGTGK 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_THEP3 (Triosephosphate isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 69/175 (39.43%), Postives = 96/175 (54.86%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISDWD--NVVLAYEPVWAIGTGK 579
            R+  + GNWK + T  E  K+V  L   +                     K +  ++  + AQ+ +  + GA+TGE+S  ML  + + +V++GHSERR    E+++ V  KV  ALS GL  I CVGE+L QRE G T  VV  QTK   + +S  D  NVV+AYEP+WAIGTGK
Sbjct:    2 RRPIIAGNWKMHMTPSEAVKLVEELIP-QVKDAKAEVVVIPPFVDLTEVNKVIQGTNILLGAQDMFWEEKGAYTGEISPLMLKEIGVKYVVIGHSERRQYFGETDEMVNKKVLSALSHGLSPIVCVGESLSQREEGKTFEVVLNQTKEALKGVSHDDIVNVVIAYEPIWAIGTGK 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 68/177 (38.42%), Postives = 97/177 (54.80%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISD--WDNVVLAYEPVWAIGTGK 579
            M+R+  + GNWK N  +E    +   +  A                       +V+ +   + AQN +  + GAFTGEV+A ML ++   +VILGHSERR L+ E++  V  K+  AL+  L  I CVGETLEQRE+  T +V+  Q +   E + +    N+V+AYEPVWAIGTGK
Sbjct:    1 MSRRILIAGNWKMNMRAESGASLAKGIVDAVGKSPAVEVVLCPPSVYLSGVADAVVGTPVELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAALAGNLVPIVCVGETLEQREADDTESVIETQIRGSLEGLDEARAANIVIAYEPVWAIGTGK 177          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_MARAV (Triosephosphate isomerase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 67/175 (38.29%), Postives = 92/175 (52.57%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISD--WDNVVLAYEPVWAIGTGK 579
            R+  V GNWK NG+ + VK++V  + +                                  AQN    + GA+TGE+SAEM  ++   +V++GHSERR L  E++     KV   L  GL  + CVGETL +RE+    AVVAEQ ++    ++D  W  VV+AYEPVWAIGTGK
Sbjct:    2 RRRIVAGNWKMNGSKDLVKQLVGAVREQSGSVGEDVEVVIIPPAIYLDQVAEQGGGRITTGAQNVSQWQSGAYTGEISAEMARDMGCGYVLVGHSERRQLFGETDSVAAAKVEQVLLSGLVAVLCVGETLAEREADQAEAVVAEQVRSGLSVVADGQWSRVVVAYEPVWAIGTGK 176          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 5.864e-27
Identity = 69/177 (38.98%), Postives = 99/177 (55.93%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISDWDNVVLAYEPVWAIGTGK 579
            M R   V GNWK NG     K +++ +  A                      +S +     + +QN   ++ GAFTGEVSA ML  +   +VI+GHSERRAL  E++  +  K A+A + GL  I CVGETLE+R+SG+T  +V  Q +A+ +   ++ + N ++AYEPVWAIGTGK
Sbjct:    1 MNRTPLVAGNWKMNGR----KDLLTEMADALAGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGK 173          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_COREF (Triosephosphate isomerase OS=Corynebacterium efficiens GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 73/182 (40.11%), Postives = 98/182 (53.85%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEE----VKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--DWDNVVLAYEPVWAIGTGKV 582
            MARK  + GNWK N   ++    V+K+   L++                           +      AQ+    + GA+TGEVSA ML  L+  WV++GHSERR   NE+++ V  K   ALS+G+  I CVGE LE RE+G+ V  V EQT+A    +S  +  N V+AYEPVWAIGTGKV
Sbjct:    4 MARKPLIAGNWKMNLDHQQAIGTVQKLAFALHKDYYEKVDVAVIVPFTDLRSVQTLVEGDKLQITYGAQDVSQHESGAYTGEVSASMLAKLNCSWVVVGHSERREYHNETDELVAAKAKAALSKGISPIVCVGEPLEIREAGTHVDYVVEQTRASLAGLSADELANTVIAYEPVWAIGTGKV 185          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 72/180 (40.00%), Postives = 99/180 (55.00%), Query Frame = 1
Query:   55 MARKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXK---SVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEK--ISDWDNVVLAYEPVWAIGTGK 579
            M R+  V  NWK NG S  V  +VS L   E                     K   + L    HV +QN    + GA+TGEVS  ML NL+I +VI+GHSERR++  E++  V  KV  AL+ GL  I C+GE+  +R +G T  V++ Q + + ++  I  + +VV+AYEPVWAIGTGK
Sbjct:    1 MTRQAIVAANWKMNGDSALVDTMVSGLADIELSSHVDVVICPSFPYLSELNQKIKAANLNEAIHVGSQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAALNAGLTPILCIGESEAERATGETETVLSAQIQPVIDEIGIEKFKDVVIAYEPVWAIGTGK 180          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 71/175 (40.57%), Postives = 93/175 (53.14%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKIS--DWDNVVLAYEPVWAIGTGK 579
            RK  + GNWK N T +E  K+V  L                         K+   S+  VAAQN    + GAFTGEV+  ML  + I +V+LGHSERR   NE+++ +  KV  A +  +  I C GETLEQRESG T   +A Q K     ++    + VV+AYEP+WAIGTGK
Sbjct:    2 RKAIIAGNWKMNKTVDEAVKVVEELKPL-VKDATCDVVVCPTFVCLDAVKKATAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAAFAHNITPIVCCGETLEQRESGVTNNFIACQIKVDIAGLTKEQAEKVVIAYEPIWAIGTGK 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB8 (Triosephosphate isomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tpiA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.658e-27
Identity = 70/175 (40.00%), Postives = 96/175 (54.86%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQAEXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKISD--WDNVVLAYEPVWAIGTGK 579
            RK  + GNWK N T +E  K+V  L                         K+V  S+  VAAQN    + GAFTGEV+  ML  + I +V+LGHSERR   NE+++ +  KV  A    +  I C GE+LEQRE+G+T  V+  Q KA    +++   + +V+AYEP+WAIGTGK
Sbjct:    2 RKAIIAGNWKMNKTIDEAVKMVEELKPL-VKDATCDVVVCPTFVCLDAVKKAVAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIDYVVLGHSERREYFNETDEALNKKVKKAFEHNITPILCCGESLEQRENGTTNKVIEAQIKADIAGLTNEQVEKLVIAYEPIWAIGTGK 175          
BLAST of CX675487 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.000e-26
Identity = 71/176 (40.34%), Postives = 99/176 (56.25%), Query Frame = 1
Query:   61 RKFFVGGNWKCNGTSEEVKKIVSTLNQA-EXXXXXXXXXXXXXXXXXXXXXKSVLRSDFHVAAQNCWVRKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLNESNDFVGDKVAYALSQGLKVIACVGETLEQRESGSTVAVVAEQTKAIAEKI--SDWDNVVLAYEPVWAIGTGK 579
            RK  V GNWK N T +E   +   L+ A +                      ++  +   VAA+NC  ++ GA+TGEVSA M+ +    +VI+GHSERRA  +E++  + +KV  ALS GL  I CVGE LE+RE+G    VVA Q +     +  +D+  ++LAYEPVWAIGTGK
Sbjct:    2 RKNIVAGNWKMNKTLQEGLALAKELDAALKGRTINCDVIIGTPFIHLASIAAAIDTTRIGVAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGK 177          
The following BLAST results are available for this feature:
BLAST of CX675487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_TREDE5.864e-2740.34Triosephosphate isomerase OS=Treponema denticola G... [more]
TPIS_THEP35.864e-2739.43Triosephosphate isomerase OS=Thermoanaerobacter ps... [more]
TPIS_RHOBA5.864e-2738.42Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_MARAV5.864e-2738.29Triosephosphate isomerase OS=Marinobacter aquaeole... [more]
TPIS_ALCBS5.864e-2738.98Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_COREF7.658e-2740.11Triosephosphate isomerase OS=Corynebacterium effic... [more]
TPIS_COLP37.658e-2740.00Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_CLOBB7.658e-2740.57Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_CLOB87.658e-2740.00Triosephosphate isomerase OS=Clostridium beijerinc... [more]
TPIS_PORGI1.000e-2640.34Triosephosphate isomerase OS=Porphyromonas gingiva... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E11-J22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675487 ID=CX675487; Name=CX675487; organism=Citrus sinensis; type=EST; length=582bp
CTCGTATTTTCGTCTCGCTTTCATCGCCAAACCAAACAAAATCCAATCGT
CGTCATGGCCCGCAAATTCTTCGTCGGCGGCAACTGGAAATGCAATGGGA
CATCTGAGGAAGTGAAGAAGATTGTTTCTACATTGAATCAAGCTGAAGTT
CCTTCTGAGGATGTTGTGGAGGTTGTTGTAAGCCCTCCGTTTGTGTTTCT
TCCTTTGGTCAAGAGTGTGTTGCGGTCTGATTTCCATGTTGCTGCTCAAA
ATTGCTGGGTTCGCAAAGGTGGTGCTTTTACCGGGGAAGTTAGTGCTGAG
ATGCTTGTCAACTTGAGCATTCCTTGGGTCATTCTTGGTCATTCTGAAAG
AAGAGCTCTTTTGAATGAGTCAAATGATTTTGTTGGAGATAAAGTTGCTT
ATGCACTTTCTCAAGGCTTGAAAGTCATTGCTTGTGTTGGAGAGACTCTG
GAACAGCGAGAATCAGGATCTACAGTGGCTGTTGTGGCTGAACAAACAAA
AGCAATCGCAGAAAAAATATCCGACTGGGACAATGTTGTGTTGGCTTATG
AGCCAGTTTGGGCCATTGGTACCGGGAAGGTT
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