CX046955

Overview
NameCX046955
Unique NameCX046955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_SULIY (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   15 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K +
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAV 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_SULIM (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   15 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K +
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAV 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_SULIL (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   15 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K +
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAV 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_SULIK (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   15 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K +
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAV 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_SULIA (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 52/152 (34.21%), Postives = 84/152 (55.26%), Query Frame = 3
Query:   15 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG  AP+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K +
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNAPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAV 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.631e-17
Identity = 53/153 (34.64%), Postives = 79/153 (51.63%), Query Frame = 3
Query:    6 IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKK 461
            I +Q +G GS  +++ +H  K   +   +D       L G V  I HDP R AP+A V F +      +K+  +  EG+  G+ + CG  A +  GN LP+  IPEG  +CN+E    D G  AR+SG YA ++S   +     V++PSG  K
Sbjct:    5 IISQNRGRGSPTYRAPSHKYKAELKHPRVD---EESTLNGTVIGIEHDPARSAPIAMVAFENG-----KKQFIVVPEGISVGEKLSCGVSAEVKPGNTLPLAEIPEGIPICNIESKPNDGGQYARSSGVYATLVSR--ELSKVVVRMPSGVLK 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_SULIN (50S ribosomal protein L2P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.655e-17
Identity = 51/152 (33.55%), Postives = 83/152 (54.61%), Query Frame = 3
Query:   15 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            QR G GS  F+S +  R G  ++ ++      G+L G V +I+H+PG   P+A +   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   +KLPS   K +
Sbjct:    8 QRAGKGSPTFRSPSWLRIGKVRYPNIF-----GHLVGKVIDIVHNPGMNTPVAIIKLENGTKFLTQ-----AIQGLVINQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDKVLIKLPSDKIKAV 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_SULSO (50S ribosomal protein L2P OS=Sulfolobus solfataricus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.962e-16
Identity = 50/152 (32.89%), Postives = 82/152 (53.95%), Query Frame = 3
Query:   15 QRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            QR G GS  F++    R G  ++ ++      G+  G V +I+H+PG  AP+A V   +  +++ Q     A +G+   Q +  GK + +  GNV+ +   PEG +VCNVE + GD G  AR++G YAV++  +   D   ++LPS   K +
Sbjct:    8 QRAGKGSPTFRNPGWLRIGKVRYPNIF-----GHFIGKVIDIVHNPGMNAPVALVKLENGTKFLMQ-----AIQGLVVNQKIEFGKGSPIANGNVIEIGDAPEGTIVCNVEENFGDGGKYARSAGSYAVVVGKS--GDRVLIRLPSDKIKAV 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_BORRA (50S ribosomal protein L2 OS=Borrelia recurrentis (strain A1) GN=rplB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    3 VIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            V RA R  +G  SV +    H++   ++R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I
Sbjct:   39 VSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMI 186          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_BORDL (50S ribosomal protein L2 OS=Borrelia duttonii (strain Ly) GN=rplB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15
Identity = 55/158 (34.81%), Postives = 85/158 (53.80%), Query Frame = 3
Query:    3 VIRAQRKGAG--SVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            V RA R  +G  SV +    H++   ++R +DF  R+ + +   VA I +DP R   +A + +R        K   IA +G+  G  +  G  A + +GN LP+ +IP G +V N+E ++G  G L R +G YA+II+   D D   VKLPSG  ++I
Sbjct:   39 VSRAGRDSSGRISVRRRGGGHKR---RYREIDFARRDKFGIPARVAAIEYDPNRSPNIALLVYRDG-----DKRYIIAPKGVKVGDILESGPNAPIKIGNALPLENIPVGKMVHNIELNIGKGGQLVRGAGGYAMIIA--SDGDYVTVKLPSGEMRMI 186          
The following BLAST results are available for this feature:
BLAST of CX046955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 298
Match NameE-valueIdentityDescription
RL2_SULIY2.631e-1734.2150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIM2.631e-1734.2150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIL2.631e-1734.2150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIK2.631e-1734.2150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULIA2.631e-1734.2150S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_METBU2.631e-1734.6450S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_SULIN7.655e-1733.5550S ribosomal protein L2P OS=Sulfolobus islandicus... [more]
RL2_SULSO4.962e-1632.8950S ribosomal protein L2P OS=Sulfolobus solfataric... [more]
RL2_BORRA1.105e-1534.8150S ribosomal protein L2 OS=Borrelia recurrentis (... [more]
RL2_BORDL1.105e-1534.8150S ribosomal protein L2 OS=Borrelia duttonii (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C02-F4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046955 ID=CX046955; Name=CX046955; organism=Citrus sinensis; type=EST; length=478bp
GTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCAC
ACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGA
GCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGG
GTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTAC
ATGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGTACACGGGTCA
GTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGC
CCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCAT
GTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTAT
CATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTG
GTGCCAAAAAGATTATTCCAAGTGGCTG
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