CX046955

Overview
NameCX046955
Unique NameCX046955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length478
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_BORBU (50S ribosomal protein L2 OS=Borrelia burgdorferi GN=rplB PE=3 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 7.922e-14
Identity = 51/155 (32.90%), Postives = 82/155 (52.90%), Query Frame = 3
Query:    6 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGY-LKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            I  +R+G G       H RK    +R +DF  R+ + +   VA I +DP R A +A + ++       +K   I+ +G+  G  +  G  A + +GN LP+ +IP G  V N+E +VG  G L R++G YA+I++   D +   VKL SG  ++I
Sbjct:   50 ISIRRRGGG-------HKRK----YRLIDFNRRDKFSIPARVASIEYDPNRSANIALLVYKDG-----EKRYIISPKGIKVGDVLESGPNAPIKIGNALPLENIPIGRTVHNIELNVGKGGQLIRSAGGYAMILA--SDGNYVTVKLSSGEMRLI 186          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_PELCD (50S ribosomal protein L2 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplB PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.351e-13
Identity = 49/153 (32.03%), Postives = 77/153 (50.33%), Query Frame = 3
Query:   18 RKGAGSVFKSHT---HHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            R  AG + K HT   H RK    +R +DF      +   +A I +DP R A +A   +        +K   +A  G+  G  V   ++A +  GN L +RSIP G  V N+E  +G  G LAR++G YA+I +   +    +++LPSG  +++
Sbjct:   43 RNNAGRITKRHTGGGHKRK----YRVIDFRREKKEIPAKIASIEYDPNRSARIALACYADG-----EKRYILAPLGLKVGDVVIASEQADIKPGNALSIRSIPLGTWVHNIELKIGKGGQLARSAGTYAMIAA--KEGKYAQLRLPSGEVRLV 184          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_MYCAP (50S ribosomal protein L2 OS=Mycoplasma agalactiae (strain PG2) GN=rplB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 48/157 (30.57%), Postives = 75/157 (47.77%), Query Frame = 3
Query:    3 VIRAQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            VI  +  G  +  K    H+ G  +  +R +DF      +   V  I +DP R A +  + +        +K   +A EG+  GQ V  G    ++VGN LP+ +IPEG  V NVE   G  G++AR++G  A I+  + D     ++L SG  + I
Sbjct:   36 VILKKNSGRNNQGKITVRHQGGRVKRYYRIIDFKRNKDDIPATVKSIEYDPNRSANICLLAYADG-----EKRYILAPEGIKVGQKVVSGNNVDILVGNSLPLSNIPEGTFVHNVEMQPGGGGIIARSAGTSAQILGKDDDGKYVVLRLKSGEMRRI 187          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.765e-13
Identity = 50/153 (32.68%), Postives = 74/153 (48.37%), Query Frame = 3
Query:    6 IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKK 461
            I AQ +G G   +++ +H  K   +      G+ +  + G V +I HDP R AP+A            +K   +A EG+  G  V  G   T+  GN LP+  IP GA VCN+E    D G   R+SG  A++I    D+    +++PSG  K
Sbjct:    5 IIAQNRGKGGPTYRAPSHRYKAALRHA----GKNDALVSGNVIDIEHDPARHAPIALARLDSG-----EKIYVLATEGLGVGDTVSWGTGGTVKNGNTLPLGEIPVGAYVCNIEARPNDGGKFVRSSGVQALVIG-KADDGRVGIRMPSGKNK 147          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_LISW6 (50S ribosomal protein L2 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rplB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   54 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            HH  G   Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + +GN L ++ IP G VV N+E   G  G L R++G  A ++    +     ++L SG  ++I
Sbjct:   53 HHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKIGNALELKDIPVGTVVHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMI 184          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_LISMO (50S ribosomal protein L2 OS=Listeria monocytogenes GN=rplB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   54 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            HH  G   Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I
Sbjct:   53 HHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMI 184          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_LISMF (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rplB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   54 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            HH  G   Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I
Sbjct:   53 HHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMI 184          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_LISMC (50S ribosomal protein L2 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rplB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   54 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            HH  G   Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I
Sbjct:   53 HHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMI 184          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_LISIN (50S ribosomal protein L2 OS=Listeria innocua GN=rplB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 46/139 (33.09%), Postives = 72/139 (51.80%), Query Frame = 3
Query:   54 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKII 467
            HH  G   Q+R +DF      + G VA I +DP R A +A + +        +K   IAA+G+  GQ +Y G +A + VGN L ++ IP G V+ N+E   G  G L R++G  A ++    +     ++L SG  ++I
Sbjct:   53 HHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADG-----EKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVL--GKEGKYVLIRLNSGEVRMI 184          
BLAST of CX046955 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 47/153 (30.72%), Postives = 76/153 (49.67%), Query Frame = 3
Query:    6 IRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKK 461
            I +Q +G G+  +++ +H  K  A+        ++  +   V +I HD  R  P+A V           +   +A EG+ TG  VY G    +  GN+  +++IPEG  VCN+E   GD G   RASG +  ++S   + D   V++PSG +K
Sbjct:    5 IISQNRGKGTPTYRAPSHRYKTDAKLLRF----KDEVVAAKVIDIQHDSARNGPVALVKLPDG-----SETYILAVEGLGTGDVVYAGDNVEIASGNITYLKNIPEGTPVCNIEAQPGDGGKFIRASGTFGFVVSR--EADKVLVQMPSGKQK 146          
The following BLAST results are available for this feature:
BLAST of CX046955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 298
Match NameE-valueIdentityDescription
RL2_BORBU7.922e-1432.9050S ribosomal protein L2 OS=Borrelia burgdorferi G... [more]
RL2_PELCD1.351e-1332.0350S ribosomal protein L2 OS=Pelobacter carbinolicu... [more]
RL2_MYCAP1.765e-1330.5750S ribosomal protein L2 OS=Mycoplasma agalactiae ... [more]
RL2_METMJ1.765e-1332.6850S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_LISW62.305e-1333.0950S ribosomal protein L2 OS=Listeria welshimeri se... [more]
RL2_LISMO2.305e-1333.0950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISMF2.305e-1333.0950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISMC2.305e-1333.0950S ribosomal protein L2 OS=Listeria monocytogenes... [more]
RL2_LISIN2.305e-1333.0950S ribosomal protein L2 OS=Listeria innocua GN=rp... [more]
RL2_ARCFU2.305e-1330.7250S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11C02_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11C02-F4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046955 ID=CX046955; Name=CX046955; organism=Citrus sinensis; type=EST; length=478bp
GTGTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTTCAAGTCCCAC
ACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCGACTTCGGTGA
GCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATTCACGATCCGG
GTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCCTTTTCGCTAC
ATGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGTACACGGGTCA
GTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGTAATGTGTTGC
CCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGTTGAGCATCAT
GTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATTATGCCGTTAT
CATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAGCTTCCATCTG
GTGCCAAAAAGATTATTCCAAGTGGCTG
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