CK938366

Overview
NameCK938366
Unique NameCK938366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938366 vs. ExPASy Swiss-Prot
Match: HAK3_ORYSJ (Probable potassium transporter 3 OS=Oryza sativa subsp. japonica GN=HAK3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.861e-19
Identity = 65/180 (36.11%), Postives = 94/180 (52.22%), Query Frame = 1
Query:    4 IAEFIRSEKP---QCSLG----IEDVECDGKMTVVGTTSSNL-DGIRMCEDDGDFSQMAGTSELKELKNPEKL-----------------RKRVRFVVPESPRIDTDTREELQELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 468
            IAEF++ E     +CS+     +  VE +G+M VV   S     G+ M E   + S +A  +   +   PE L                 R+RVRF V      D   +EEL  L++A+ AG+A+I+GH Y++A+  SS+ K+  +N+ Y FLR+N RGP   L IP  S +EVGMIY V
Sbjct:  633 IAEFVQMEADFDQRCSISDDGVVASVEVEGRMAVVPRPSDLARTGLLMREPGEEESVVARAAAAAK---PESLIHSMHTMHEAESPGFASRRRVRFEVANQ-HTDPRVKEELSALVEAKHAGVAYIMGHSYIKARKSSSVFKKFAVNVAYAFLRKNCRGPGLVLNIPHISLIEVGMIYYV 808          
BLAST of CK938366 vs. ExPASy Swiss-Prot
Match: HAK8_ORYSJ (Putative potassium transporter 8 OS=Oryza sativa subsp. japonica GN=HAK8 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.654e-19
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1
Query:  202 KRVRFVVPE---SPRI--DTDTREELQELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 468
            K+VRF +     SP    +    EEL+ L  AR+AG AFILGH +V+ K GSSL+KRL +++GY+FLRRN RGP  AL +P AS LEVGM+Y++
Sbjct:  700 KQVRFFIDSHVASPEAADNKQVAEELEALAAARDAGTAFILGHSHVQCKPGSSLLKRLAVDVGYNFLRRNCRGPDVALRVPPASLLEVGMVYVL 793          
BLAST of CK938366 vs. ExPASy Swiss-Prot
Match: POT3_ARATH (Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 1
Query:    4 IAEFIRSEKPQCSLGIEDVECDGKMTVVGTTSSNLDGIRMCEDDGDFSQMAGTSE----LKELKNPEKLRKRVRFVVPESPRI-----------DTDTR-----EELQELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIY 462
            IAEFI+ E         D   DG++ VV   +SN  G R+     + + +AG+S     +   K+P  L+ R  +   E PR+           DT  R     EEL +L++A++A +A+I+GH +V+AK  S  +K+LV+N+ Y FLR+N R P   L IP    ++VGM Y
Sbjct:  605 IAEFIQLESEGYGGSNTDRSIDGRLAVV--KASNKFGTRLSRSISE-ANIAGSSRSQTTVTNSKSPALLKLRAEYE-QELPRLSMRRMFQFRPMDTKFRQPQVKEELFDLVNAKDAEVAYIVGHGHVKAKRNSVFVKQLVVNVAYSFLRKNCRSPGVMLNIPHICLIKVGMNY 773          
BLAST of CK938366 vs. ExPASy Swiss-Prot
Match: POT1_ARATH (Potassium transporter 1 OS=Arabidopsis thaliana GN=POT1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.548e-14
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  253 REELQELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 468
            +EE  E+M+A+EAG+A+ILGH Y +AK  SS++K+L +N+ + F+  N RG    L +P  S LEVGM+Y V
Sbjct:  641 KEECMEIMEAKEAGVAYILGHSYAKAKQSSSVLKKLAVNVVFAFMSTNCRGTDVVLNVPHTSLLEVGMVYYV 712          
BLAST of CK938366 vs. ExPASy Swiss-Prot
Match: HAK13_ORYSJ (Probable potassium transporter 13 OS=Oryza sativa subsp. japonica GN=HAK13 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.197e-13
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  259 ELQELMDAREAGMAFILGHCYVRAKSGSSLMKRLVINLGYDFLRRNSRGPTYALGIPCASTLEVGMIYLV 468
            E++ELM+ +EAG+++++GH  V A   SS +K+  +N+ Y FLRRNSR P   LGIP  S +EVGM Y V
Sbjct:  709 EVKELMEEKEAGVSYMIGHTCVFAHESSSAVKKFAVNVVYGFLRRNSRRPAVVLGIPHTSLIEVGMAYRV 778          
The following BLAST results are available for this feature:
BLAST of CK938366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HAK3_ORYSJ5.861e-1936.11Probable potassium transporter 3 OS=Oryza sativa s... [more]
HAK8_ORYSJ7.654e-1953.19Putative potassium transporter 8 OS=Oryza sativa s... [more]
POT3_ARATH2.548e-1434.68Potassium transporter 3 OS=Arabidopsis thaliana GN... [more]
POT1_ARATH2.548e-1448.61Potassium transporter 1 OS=Arabidopsis thaliana GN... [more]
HAK13_ORYSJ8.197e-1350.00Probable potassium transporter 13 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_G12 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938366 ID=CK938366; Name=CK938366; organism=Citrus sinensis; type=EST; length=668bp
GGGATTGCCGAATTCATCCGTTCGGAGAAACCACAGTGCAGTTTAGGAAT
AGAAGACGTGGAATGCGACGGAAAAATGACAGTTGTTGGGACTACTTCGT
CAAACTTAGATGGCATAAGAATGTGTGAAGATGATGGAGATTTTTCCCAA
ATGGCAGGCACTTCTGAGCTGAAGGAGCTAAAGAACCCAGAGAAACTGAG
GAAGAGAGTGAGATTCGTTGTGCCAGAGAGTCCTCGGATTGATACAGACA
CAAGAGAGGAGTTACAAGAACTGATGGATGCAAGGGAGGCAGGAATGGCA
TTTATACTTGGACACTGTTACGTCAGAGCCAAGAGCGGGTCAAGTTTGAT
GAAGAGACTTGTGATAAACCTTGGATATGATTTCTTGAGAAGAAATTCCA
GGGGACCAACTTATGCACTCGGCATTCCCTGTGCATCTACTCTAGAGGTA
GGGATGATCTACCTTGTTTAAATTCCAGAATACATTATACTTATGCTTTT
GAGTCATATTGTATATGAAAGATCACAGCTTCAACCATAGATTATTCTGT
AGTCACTCGAAAATCATCATGTACAAGTGTAACCTGTACAAGTGTAACCT
TTCTATCATGCTTCCTTCACTCTTAAATTTTAGTTACAGTAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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