CK938364

Overview
NameCK938364
Unique NameCK938364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H31_ENCCU (Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 PE=3 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.571e-38
Identity = 81/128 (63.28%), Postives = 100/128 (78.12%), Query Frame = 3
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKS-APTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 431
            MARTKQ+ARK+TGGKAPRKQL+ K+ARK  +P +    K  RYRPG+VAL+EIR+YQKST+ LIR+LPFQR  R + ++    TD+RFQ  A+ ++QEA E YLVGLFED  LCA HAKRVT+ PKDI
Sbjct:    1 MARTKQSARKTTGGKAPRKQLSAKSARKGVSPASSAGAKKSRYRPGSVALKEIRRYQKSTDFLIRRLPFQRACRSVVKECSNATDIRFQGPALASIQEALEVYLVGLFEDAMLCAYHAKRVTVFPKDI 128          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H3L3_LILLO (Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE=2 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.729e-35
Identity = 85/149 (57.05%), Postives = 97/149 (65.10%), Query Frame = 3
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTT-----------------------GGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MAR K  AR STGGKAPRKQLA KA RK+AP T                        GVK+PHRYRPG + LREIRKY+K+    I KLPF RLVR+I Q+ K  LRFQS A+ A +E +EAYLV LFED    AIHAKRVT++PKDIQ
Sbjct:    1 MARMKLNARMSTGGKAPRKQLAYKAVRKAAPPTIGVKLPNSYRPGDQTVCKPAPPTDGVKEPHRYRPGKMGLREIRKYKKNARFFISKLPFHRLVRKITQNLKAHLRFQSTAMPAPEEVSEAYLVKLFED----AIHAKRVTLVPKDIQ 145          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H3_ENTHI (Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.781e-33
Identity = 82/127 (64.57%), Postives = 91/127 (71.65%), Query Frame = 3
Query:   57 MARTK-QTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTK    R S       K +A KAA+K        KK  R  PG VAL EI+  Q+STELL+RK PFQ LVREIAQ  K+DLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKR+TIMPKD+Q
Sbjct:    1 MARTKGHIERPSNKSAKAVKNVAFKAAKKMLSKDSTKKK--RAHPGAVALTEIKVLQRSTELLLRKAPFQALVREIAQVSKSDLRFQSAAISALQEAAEAYLVGLFEDTNLCAIHAKRITIMPKDMQ 125          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H33_HORVU (Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.894e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 3
Query:  225 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 70          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: CENPA_NEUCR (Histone H3-like centromeric protein cse-4 OS=Neurospora crassa GN=cse-4 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.685e-30
Identity = 72/135 (53.33%), Postives = 95/135 (70.37%), Query Frame = 3
Query:   57 MARTKQTARKSTGGKAP------RKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            + ++K  ++K+     P      R++    + +   P   G K+  RYRPGT+AL+EIR YQ++T+LL+ KLPF RLVREIA  F+    ++R+QS A+LALQEAAEA+LV LFEDTNLCAIHAKRVTIM KDIQ
Sbjct:    8 VTKSKAVSKKAAAVPTPKATPPGRRKSRASSVQPGDPVPQGKKR--RYRPGTLALKEIRNYQRTTDLLVAKLPFARLVREIAMQFRPMDEEMRWQSQAILALQEAAEAFLVHLFEDTNLCAIHAKRVTIMQKDIQ 140          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H3_LEIIN (Histone H3 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.983e-30
Identity = 72/127 (56.69%), Postives = 91/127 (71.65%), Query Frame = 3
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHR-YRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            M+RTK+TAR        ++ + +K ++K+     GVK+ HR +RPGT A+REIRK+QKST LLI+  PFQRLVR + +  K  LRFQS A++ALQEA EAY+V L  DTNL  IHAKRVTI PKDIQ
Sbjct:    1 MSRTKETARA-------KRTITSKKSKKAPSGASGVKRSHRRWRPGTCAIREIRKFQKSTSLLIQCAPFQRLVRGVERQ-KEGLRFQSSAIMALQEATEAYIVSLMADTNLACIHAKRVTIQPKDIQ 119          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H3L_ENCCU (Histone H3-like protein OS=Encephalitozoon cuniculi GN=ECU09_0450 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.020e-29
Identity = 69/128 (53.91%), Postives = 93/128 (72.66%), Query Frame = 3
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTG---GVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 431
            M+RTKQTA K+ GGKAPRK ++ K    S P++G    + K  R++ G +AL+EIRKYQKST+LLIRK PFQR+VR++ +  +  +RFQ+ A++A QEA E +L  L ED   C +HAKRVT+MPKDI
Sbjct:    1 MSRTKQTASKALGGKAPRKGISAK----SIPSSGCSPAMPKRTRFKAGALALKEIRKYQKSTDLLIRKRPFQRMVRDLCKG-REGVRFQASAIVAFQEAVENFLTSLMEDAYRCVLHAKRVTLMPKDI 123          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: CENPA_CANAL (Histone H3-like centromeric protein CSE4 OS=Candida albicans GN=CSE4 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.273e-29
Identity = 71/98 (72.45%), Postives = 81/98 (82.65%), Query Frame = 3
Query:  150 TTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            T   VKK  RYRPGT ALREIR+YQKST+LLIRKLPF RLVREI+ DF      LR+QS+A+LALQEA+E++L+ L EDTNLCAIHAKRVTIM KDIQ
Sbjct:  104 TVPRVKK--RYRPGTKALREIRQYQKSTDLLIRKLPFARLVREISLDFVGPSYGLRWQSNAILALQEASESFLIHLLEDTNLCAIHAKRVTIMQKDIQ 199          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: CENPA_DANRE (Histone H3-like centromeric protein A OS=Danio rerio GN=cenpa PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.128e-28
Identity = 65/125 (52.00%), Postives = 86/125 (68.80%), Query Frame = 3
Query:   63 RTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            R   T R+ +   +      ++  R S P+    +K H++RPGT AL EIRKYQKST LL+RK PF RLVRE+ Q F  + + +Q +A++ALQEAAEA++V LF D NLCAIHAKRVT+ P+DIQ
Sbjct:   10 RKPSTPRRRSPPASLPPPAGSRTRRHSGPSGSSPRKKHKFRPGTRALMEIRKYQKSTGLLLRKAPFSRLVREVCQMFSREHMMWQGYALMALQEAAEAFMVRLFSDANLCAIHAKRVTLFPRDIQ 134          
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: CENPA_PICFA (Histone H3-like centromeric protein CSE4 OS=Pichia farinosa GN=CSE4 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.513e-28
Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 3
Query:  177 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            RYRPGT ALREIR+YQ+S+ELLIRKLPF RLV+E+A+++      +R+QS+AVLALQEA EA+LV L EDTNLCAIHAKRVTIM KDIQ
Sbjct:   61 RYRPGTKALREIRRYQRSSELLIRKLPFARLVKEVAENYIGADYGIRWQSNAVLALQEACEAFLVHLLEDTNLCAIHAKRVTIMQKDIQ 149          
The following BLAST results are available for this feature:
BLAST of CK938364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H31_ENCCU1.571e-3863.28Histone H3.1 OS=Encephalitozoon cuniculi GN=HHT1 P... [more]
H3L3_LILLO4.729e-3557.05Histone H3-like 3 OS=Lilium longiflorum GN=leH3 PE... [more]
H3_ENTHI5.781e-3364.57Histone H3 OS=Entamoeba histolytica GN=H3 PE=3 SV=... [more]
H33_HORVU4.894e-32100.00Histone H3.3 (Fragment) OS=Hordeum vulgare PE=3 SV... [more]
CENPA_NEUCR2.685e-3053.33Histone H3-like centromeric protein cse-4 OS=Neuro... [more]
H3_LEIIN5.983e-3056.69Histone H3 OS=Leishmania infantum PE=2 SV=1[more]
H3L_ENCCU1.020e-2953.91Histone H3-like protein OS=Encephalitozoon cunicul... [more]
CENPA_CANAL2.273e-2972.45Histone H3-like centromeric protein CSE4 OS=Candid... [more]
CENPA_DANRE1.128e-2852.00Histone H3-like centromeric protein A OS=Danio rer... [more]
CENPA_PICFA2.513e-2873.03Histone H3-like centromeric protein CSE4 OS=Pichia... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_G10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938364 ID=CK938364; Name=CK938364; organism=Citrus sinensis; type=EST; length=803bp
GGGAACGCGAATTTTTAGAGAGAGAAATTGAGTAGAGGAGTTGAAGAAAC
TCAGAGATGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAA
GGCTCCTAGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCA
CCACCGGTGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCC
CTTCGAGAAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAA
ACTCCCATTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTG
ATCTGCGTTTCCAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAG
GCTTACCTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGC
AAAGCGTGTCACTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCC
GTGGCGAGCGTGCTTAAGCGTAATTGCTGGTTGCTTCAATTTGAATGACT
GGAAGGGAAGGGGGCAGTTGTAATGTGTTAATTTGTACGTGGGGGTTGGT
GGGGGGGTAGATAGGGGTAGGATTCCAGTAGTTATTAGAATATGGCTTTT
GTCATCATCTGGGTTTGTTTTTGGTGGTGTTTTATAATGTCTATTTGTTG
ATGATGGGGATTTTAATTCGCCATAAGAGACTGGCTTTTATGTGTTCTTT
TGGATATCTGTTGCCACAGTAGTGGTGGTGTTGAACATCTCTATTATTTT
GCATCTAATCTAAGTTTAGTTTGTTANNNAAAAAAAAAAAAAAAAAAAAA
AAA
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