CK938364

Overview
NameCK938364
Unique NameCK938364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Developing fruit albedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1030 contig Csv1_Contig1030:350..1149. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H3_ACRFO (Histone H3 OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.538e-62
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAA KSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AVLALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAAAKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVLALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H33_TRIPS (Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3 PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 4.538e-62
Identity = 121/126 (96.03%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.538e-62
Identity = 121/126 (96.03%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H32_CRILO (Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 4.538e-62
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTV LREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVTLREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 7.741e-62
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDMQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 1.011e-61
Identity = 120/126 (95.24%), Postives = 123/126 (97.62%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQ+ARKS GGKAP KQLATKAARKSAPTTGGVKKPHR+RPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD+Q
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H33_XENTR (Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1 PE=1 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 1.011e-61
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H33_XENLA (Histone H3.3 OS=Xenopus laevis PE=1 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 1.011e-61
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H33_SPISO (Histone H3.3 OS=Spisula solidissima PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.011e-61
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
[Close]
BLAST of CK938364 vs. ExPASy Swiss-Prot
Match: H33_RAT (Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.011e-61
Identity = 120/126 (95.24%), Postives = 124/126 (98.41%), Query Frame = 3 
Query:   57 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 434
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A+ ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQ
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126
The following BLAST results are available for this feature:
BLAST of CK938364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
H3_ACRFO4.538e-6296.03Histone H3 OS=Acropora formosa PE=3 SV=2[more]
H33_TRIPS4.538e-6296.03Histone H3.3 OS=Trichinella pseudospiralis GN=HHT3... [more]
H32_ENCAL4.538e-6296.03Histone H3.2 OS=Encephalartos altensteinii PE=1 SV... [more]
H32_CRILO4.538e-6295.24Histone H3.2 OS=Cricetulus longicaudatus PE=2 SV=3[more]
H332_CAEEL7.741e-6295.24Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H3L1_ARATH1.011e-6195.24Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H33_XENTR1.011e-6195.24Histone H3.3 OS=Xenopus tropicalis GN=TGas113e22.1... [more]
H33_XENLA1.011e-6195.24Histone H3.3 OS=Xenopus laevis PE=1 SV=3[more]
H33_SPISO1.011e-6195.24Histone H3.3 OS=Spisula solidissima PE=1 SV=2[more]
H33_RAT1.011e-6195.24Histone H3.3 OS=Rattus norvegicus GN=H3f3b PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004443_G10 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone A1650001_IVF_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938364 ID=CK938364; Name=CK938364; organism=Citrus sinensis; type=EST; length=803bp
GGGAACGCGAATTTTTAGAGAGAGAAATTGAGTAGAGGAGTTGAAGAAAC
TCAGAGATGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAA
GGCTCCTAGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCA
CCACCGGTGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCC
CTTCGAGAAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAA
ACTCCCATTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTG
ATCTGCGTTTCCAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAG
GCTTACCTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGC
AAAGCGTGTCACTATTATGCCCAAGGACATACAGCTTGCCCGTAGGATCC
GTGGCGAGCGTGCTTAAGCGTAATTGCTGGTTGCTTCAATTTGAATGACT
GGAAGGGAAGGGGGCAGTTGTAATGTGTTAATTTGTACGTGGGGGTTGGT
GGGGGGGTAGATAGGGGTAGGATTCCAGTAGTTATTAGAATATGGCTTTT
GTCATCATCTGGGTTTGTTTTTGGTGGTGTTTTATAATGTCTATTTGTTG
ATGATGGGGATTTTAATTCGCCATAAGAGACTGGCTTTTATGTGTTCTTT
TGGATATCTGTTGCCACAGTAGTGGTGGTGTTGAACATCTCTATTATTTT
GCATCTAATCTAAGTTTAGTTTGTTANNNAAAAAAAAAAAAAAAAAAAAA
AAA
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