CX675482

Overview
NameCX675482
Unique NameCX675482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.754e-49
Identity = 84/153 (54.90%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.143e-48
Identity = 84/153 (54.90%), Postives = 112/153 (73.20%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  + A  PV   +   S   SNG + +CMK W P+  KK+E LSYLP L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN+  PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   20 FTGLK--ANAAFPVTKKVNGFSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKP 170          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.143e-48
Identity = 84/153 (54.90%), Postives = 113/153 (73.86%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  +   +  K++    +   SNG + RCM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN+  PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.493e-48
Identity = 84/153 (54.90%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.950e-48
Identity = 86/151 (56.95%), Postives = 112/151 (74.17%), Query Frame = 3
Query:  246 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            GLK  S +  PV       +   SNG + +CM+ W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++IR + F+N +Q QC+SF+  KP
Sbjct:   32 GLK--SSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.950e-48
Identity = 86/155 (55.48%), Postives = 115/155 (74.19%), Query Frame = 3
Query:  234 SGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + + GLK  +   +  K  +  +S   SNG +  CM  W PIN KK+E LSYLP LSD+ + KEI+Y+L+KGW+PCLEF+ E G+V+RE+ + PGYYDGRYWTMWKLPMFGC D++Q+LNE+QE KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   24 ASFNGLKSAASFPVTRKQDLDITS-IASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.950e-48
Identity = 86/153 (56.21%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK T+   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.950e-48
Identity = 86/153 (56.21%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK T+   +  K ++  +S   SNG +  CM+ W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A++R + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.950e-48
Identity = 84/153 (54.90%), Postives = 113/153 (73.86%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  + A  PV   +   S   SNG + +CMK W P+  KK+E LSYLP L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+  KP
Sbjct:   20 FTGLK--ANAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.327e-48
Identity = 86/153 (56.21%), Postives = 114/153 (74.51%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK +S +  PV       +   SNG + +CM+ W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+PCLEF+ E G+V+REN + PGYYDGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++IR + F+N +Q QC+SF+  KP
Sbjct:   30 FTGLKSSSAS--PVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          
The following BLAST results are available for this feature:
BLAST of CX675482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS7_FLAPR8.754e-4954.90Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS_FLATR1.143e-4854.90Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLLC1.143e-4854.90Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_FLAPR1.493e-4854.90Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_PYRPY1.950e-4856.95Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CAPAN1.950e-4855.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_SOLLC1.950e-4856.21Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC1.950e-4856.21Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1_FLAPR1.950e-4854.90Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_MALSP3.327e-4856.21Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E08-J16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675482 ID=CX675482; Name=CX675482; organism=Citrus sinensis; type=EST; length=749bp
CTTTGATCTTCCCTAATCCCTTAACAAACCATACATCACTTCACAAACAC
CTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGTTTCCATTGCCTTGAG
AACTAAAATAATTAATTATTACTCTTTTGCTATCTCGGTCTTAAGTGTTG
CCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAGTGCCCGAAGAAGATG
TCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTATCTTGGCCT
AAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCATTGCATGGA
GCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATGAAGACATGG
AATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCTGCCATCGCT
CTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCAAAAAGGGAT
GGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCNAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCT
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