CX675482

Overview
NameCX675482
Unique NameCX675482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_PORDE (Ribulose bisphosphate carboxylase small chain OS=Porphyra dentata GN=rbcS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  384 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 695
            S+LP L+D+ I K++ Y++ KG    +E+ +    H  NS         YW +W LP+F   D+S ++ EI  C+KA PN Y++  AF+N +  +   MSF++ +P
Sbjct:    9 SFLPDLTDEQINKQLTYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_SINMW (Ribulose bisphosphate carboxylase small chain OS=Sinorhizobium medicae (strain WSM419) GN=cbbS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 35/106 (33.02%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  384 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 695
            S+LP L+D+ I  +++Y L +GW   +E+ +    H  N+         YW MW  PMF   D+  ++ E+++C+KA+P  YIR  AF++ +  +   MSF++ +P
Sbjct:    9 SFLPDLTDEQITAQVEYCLGRGWAIGVEYTDDP--HPRNT---------YWEMWGNPMFDLRDAKGVMMEVEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRP 103          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_RHIME (Ribulose bisphosphate carboxylase small chain OS=Rhizobium meliloti GN=cbbS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  384 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 695
            S+LP L+D+ I  ++ Y L KGW   +E+ +    H  N+         YW MW  PMF   D+  ++ E+++C+KA+P  YIR  AF++ +  +   MSF++ +P
Sbjct:    9 SFLPDLTDEQITAQVQYCLGKGWAIGVEYTDDP--HPRNT---------YWEMWGNPMFDLKDAKGVMMELEDCRKAHPQDYIRLNAFDSSRGLETVTMSFIVNRP 103          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_PORYE (Ribulose bisphosphate carboxylase small chain OS=Porphyra yezoensis GN=rbcS PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  384 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 695
            S+LP L+D+ I K++ Y++ KG    +E+ +    H  NS         YW +W LP+F   D+S ++ EI  C+KA PN Y++  AF+N +  +   MSF++ +P
Sbjct:    9 SFLPDLTDEQINKQLAYIVSKGLSANVEYTDDP--HPRNS---------YWELWGLPLFDVKDASAVMYEISSCRKAKPNYYVKVNAFDNTRGIESCVMSFIVNRP 103          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBSC_RALEU (Ribulose bisphosphate carboxylase small chain, chromosomal OS=Ralstonia eutropha GN=cbxSC PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.553e-12
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  384 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 695
            S+LP L+D+ I K+++Y L +GW   LE+ +    H  N+         YW M+ LPMF   D++ IL EI   +  +PN YIR  AF++    +   MSF++ +P
Sbjct:    9 SFLPELTDEQITKQLEYCLNQGWAVGLEYTDDP--HPRNT---------YWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRP 103          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_PYLLI (Ribulose bisphosphate carboxylase small chain OS=Pylaiella littoralis GN=rbcS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  384 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQ--KQGQCMSFLIQKP 695
            S+LP LSD+ I  ++ Y + KGW   +E+ +    H  NS         YW +W LP+F   D + ++ E+ EC+K  P  YI+  AF+     +   MSF++Q+P
Sbjct:    9 SFLPDLSDEQIKLQVGYAMSKGWAVSVEWTDDP--HPRNS---------YWELWGLPLFDVKDPAAVMYELAECRKVNPEGYIKINAFDASIGTESCVMSFIVQRP 103          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_GALSU (Ribulose bisphosphate carboxylase small chain OS=Galdieria sulphuraria GN=rbcS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.460e-11
Identity = 36/106 (33.96%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  384 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 695
            S+LP L+D+ I K+IDYM+ K     +E+     +H  NS         +W MW LP+F   D + +L EI  C+KA  N YI+ + F++++  +   +SF++ +P
Sbjct:    9 SFLPDLTDEQIKKQIDYMISKKLAIGIEY--TNDIHPRNS---------FWEMWGLPLFEVTDPAPVLFEINACRKAKSNFYIKVVGFSSERGIESTIISFIVNRP 103          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_ANTSP (Ribulose bisphosphate carboxylase small chain OS=Antithamnion sp. GN=rbcS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 3
Query:  384 SYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQK--QGQCMSFLIQKP 695
            S+LP L+D+ I K+I Y + + W   +EF +    H  N+         YW +W LP+F  ND   ++ E++ C+K +   YI+  AF+N +  +   +SF+I +P
Sbjct:    9 SFLPDLTDEQIKKQIAYAVSQNWAINIEFTDDP--HPRNN---------YWELWGLPLFDINDVESVMYELESCRKQHSGLYIKINAFDNTRGVESCVLSFIINRP 103          
The following BLAST results are available for this feature:
BLAST of CX675482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS_PORDE2.252e-1234.91Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SINMW2.941e-1233.02Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_RHIME2.941e-1233.96Ribulose bisphosphate carboxylase small chain OS=R... [more]
RBS_PORYE2.941e-1234.91Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBSC_RALEU6.553e-1235.85Ribulose bisphosphate carboxylase small chain, chr... [more]
RBS_PYLLI8.558e-1233.96Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_GALSU1.460e-1133.96Ribulose bisphosphate carboxylase small chain OS=G... [more]
RBS_ANTSP5.547e-1132.08Ribulose bisphosphate carboxylase small chain OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E08-J16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675482 ID=CX675482; Name=CX675482; organism=Citrus sinensis; type=EST; length=749bp
CTTTGATCTTCCCTAATCCCTTAACAAACCATACATCACTTCACAAACAC
CTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGTTTCCATTGCCTTGAG
AACTAAAATAATTAATTATTACTCTTTTGCTATCTCGGTCTTAAGTGTTG
CCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAGTGCCCGAAGAAGATG
TCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTATCTTGGCCT
AAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCATTGCATGGA
GCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATGAAGACATGG
AATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCTGCCATCGCT
CTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCAAAAAGGGAT
GGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCNAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCT
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