CX675482
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.678e-47 Identity = 83/152 (54.61%), Postives = 113/152 (74.34%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK T A LPV SS +VSNG + RCM+ W KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+ KP Sbjct: 16 FQGLKST--AGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 6.274e-47 Identity = 87/170 (51.18%), Postives = 117/170 (68.82%), Query Frame = 3 Query: 201 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 SA++ T+P + + GLK S A PV ++ SNG + CMK W P+ KKFE LSYLP L++ + KE+DY+L+ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK YPNA+IR + F+N +Q QC+SF+ KP Sbjct: 8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2) HSP 1 Score: 187.578 bits (475), Expect = 6.274e-47 Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = 3 Query: 315 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 SNG + CM+ W PI KKFE LSYLP L+D +AKE+DY+++ WIPC+EF+ E G+V+RE+ PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+ KP Sbjct: 48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 8.194e-47 Identity = 80/128 (62.50%), Postives = 106/128 (82.81%), Query Frame = 3 Query: 315 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 SNG + +CM+ W P+ KKFE LSYLP LS + +AKE+DY+L+K IPCLEF+ E G+V+RE+++ PGYYDGRYWTMWKLPMFGCNDSSQ+L E++ECKKAYP+A+IR + F+N++Q Q +SF+ KP Sbjct: 52 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 8.194e-47 Identity = 87/174 (50.00%), Postives = 120/174 (68.97%), Query Frame = 3 Query: 198 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 M +S+ TA A ++GLK TS PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E ECKK YP A+IR + F+N +Q QC+SF++++P Sbjct: 7 MLSSVATAACAAPAQASMVAPFVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.398e-46 Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK S A P S SNG + +CMK W P+ KK+E LSYLP L++ +AKE+DY+L+K W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK YP A+IR + F+N +Q QC+ F+ +P Sbjct: 25 FTGLK--SNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.398e-46 Identity = 82/153 (53.59%), Postives = 113/153 (73.86%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 ++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E ECKK YP A+IR + F+N +Q QC+SF+++KP Sbjct: 28 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 186.422 bits (472), Expect = 1.398e-46 Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 3 Query: 189 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 P M++S T + + GLK T A LPV S +VSNG + RCM+ W KKFE LSYLP LS ++++K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+ +P Sbjct: 3 PAVMASSATTV----APFQGLKST--AGLPVSRRSRGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 165
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.825e-46 Identity = 83/153 (54.25%), Postives = 113/153 (73.86%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK + + K ++ +S SNG + RCM+ W PIN KK+E LSYLP LS + + EI+Y+LK GW+PCLEF+ E G+V+RE++ PGYYDGRYWTMWKLPMFGC D++Q+ E+QE KKAYP+A+IR + F+N +Q QC+SF+ KP Sbjct: 26 FTGLKSNASFPVSRKTNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 1.825e-46 Identity = 80/152 (52.63%), Postives = 112/152 (73.68%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 ++GLK S A + ++ S SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E ECKK YP A+IR + F+N +Q QC+SF+++KP Sbjct: 28 FVGLKSAS-AFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178 The following BLAST results are available for this feature:
BLAST of CX675482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675482 ID=CX675482; Name=CX675482; organism=Citrus sinensis; type=EST; length=749bpback to top |