CX675482

Overview
NameCX675482
Unique NameCX675482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.678e-47
Identity = 83/152 (54.61%), Postives = 113/152 (74.34%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK T  A LPV      SS +VSNG + RCM+ W     KKFE LSYLP LS +++ K++DY+++  W+PCLEF +VG++ RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+  KP
Sbjct:   16 FQGLKST--AGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.274e-47
Identity = 87/170 (51.18%), Postives = 117/170 (68.82%), Query Frame = 3
Query:  201 SASIFTAPVAGS---GYLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            SA++ T+P   +    + GLK  S A  PV         ++ SNG +  CMK W P+  KKFE LSYLP L++  + KE+DY+L+  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E+QECK  YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:    8 SAAVVTSPAQATMVAPFTGLK--SSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKP 175          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 6.274e-47
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = 3
Query:  315 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            SNG +  CM+ W PI  KKFE LSYLP L+D  +AKE+DY+++  WIPC+EF+ E G+V+RE+   PGYYDGRYWTMWKLP+FGC DS+Q+L E++ECKK YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:   48 SNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.194e-47
Identity = 80/128 (62.50%), Postives = 106/128 (82.81%), Query Frame = 3
Query:  315 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            SNG + +CM+ W P+  KKFE LSYLP LS + +AKE+DY+L+K  IPCLEF+ E G+V+RE+++ PGYYDGRYWTMWKLPMFGCNDSSQ+L E++ECKKAYP+A+IR + F+N++Q Q +SF+  KP
Sbjct:   52 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 8.194e-47
Identity = 87/174 (50.00%), Postives = 120/174 (68.97%), Query Frame = 3
Query:  198 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            M +S+ TA  A          ++GLK TS    PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK YP A+IR + F+N +Q QC+SF++++P
Sbjct:    7 MLSSVATAACAAPAQASMVAPFVGLKSTSA--FPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.398e-46
Identity = 82/153 (53.59%), Postives = 110/153 (71.90%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  S A  P        S   SNG + +CMK W P+  KK+E LSYLP L++  +AKE+DY+L+K W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+ ECKK YP A+IR + F+N +Q QC+ F+  +P
Sbjct:   25 FTGLK--SNAAFPTTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.398e-46
Identity = 82/153 (53.59%), Postives = 113/153 (73.86%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            ++GLK  S +  PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct:   28 FVGLK--SASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.398e-46
Identity = 86/169 (50.89%), Postives = 120/169 (71.01%), Query Frame = 3
Query:  189 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            P  M++S  T     + + GLK T  A LPV      S  +VSNG + RCM+ W     KKFE LSYLP LS ++++K++DY+++  W+PCLEF +VG+V RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+  +P
Sbjct:    3 PAVMASSATTV----APFQGLKST--AGLPVSRRSRGSLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRP 165          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.825e-46
Identity = 83/153 (54.25%), Postives = 113/153 (73.86%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LS + +  EI+Y+LK GW+PCLEF+ E G+V+RE++  PGYYDGRYWTMWKLPMFGC D++Q+  E+QE KKAYP+A+IR + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSNASFPVSRKTNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.825e-46
Identity = 80/152 (52.63%), Postives = 112/152 (73.68%), Query Frame = 3
Query:  240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695
            ++GLK  S A    + ++   S   SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N+K PGYYDGRYWTMWKLPMFGC D++Q++ E  ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct:   28 FVGLKSAS-AFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
The following BLAST results are available for this feature:
BLAST of CX675482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS_HORVU3.678e-4754.61Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_BRANA6.274e-4751.18Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1A_ARATH6.274e-4760.16Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_BETVE8.194e-4762.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG8.194e-4750.00Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS_HELAN1.398e-4653.59Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG1.398e-4653.59Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_WHEAT1.398e-4650.89Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_STELP1.825e-4654.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FRIAG1.825e-4652.63Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E08-J16-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675482 ID=CX675482; Name=CX675482; organism=Citrus sinensis; type=EST; length=749bp
CTTTGATCTTCCCTAATCCCTTAACAAACCATACATCACTTCACAAACAC
CTAGGCTAACTCCTTTTGTCCTTTACTTGAACGGTTTCCATTGCCTTGAG
AACTAAAATAATTAATTATTACTCTTTTGCTATCTCGGTCTTAAGTGTTG
CCTCTCTCTTTTAACTATCTTGTTTCTTGAAACAGTGCCCGAAGAAGATG
TCTGCAAGCATCTTTACAGCTCCAGTTGCTGGTTCTGGCTATCTTGGCCT
AAAACCCACATCGAAAGCTTTGCTTCCAGTTAAGGATTCCATTGCATGGA
GCAGCAAAACAGTCTCAAACGGTTCAAAAACTCGATGCATGAAGACATGG
AATCCAATCAATAACAAAAAGTTTGAGGCCCTCTCCTACCTGCCATCGCT
CTCGGATGATTCAATTGCAAAGGAGATTGACTACATGCTCAAAAAGGGAT
GGATCCCTTGCCTTGAATTTGATGAGGTGGGATATGTGCACAGGGAGAAT
AGCAAAATGCCAGGGTATTATGATGGGAGGTATTGGACAATGTGGAAGTT
GCCAATGTTTGGATGCAATGATTCATCTCAAATCCTGAATGAAATACAAG
AGTGCAAAAAAGCATACCCNAATGCTTATATTCGCTGCTTGGCATTTAAC
AATCAGAAACAGGGTCAGTGCATGTCCTTTCTCATCCAGAAACCAACCAC
CACCACTAGCACCTAAAAGCACTTCTCTCACTTTGTTTGGTTGAATTCT
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