CX675482
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46 Identity = 86/174 (49.43%), Postives = 119/174 (68.39%), Query Frame = 3 Query: 198 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 M +S+ TA A ++GLK S + PV A T+ SNG + +CMK W + KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF G+V R+N+K PGYYDGRYWTMWKLPMFGC ++Q++ E ECKK YP A+IR + F+N +Q QC+SF+++KP Sbjct: 7 MLSSVATAACAAPAQASMVAPFVGLK--SASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 5.311e-46 Identity = 81/153 (52.94%), Postives = 112/153 (73.20%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK + + K ++ +S SNG + +CM+ W PIN KK+E LSYLP LS + + EI+Y+LK GW+PCLEF+ E G+V+RE+ PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A++R + F+N +Q QC+SF+ KP Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 9.059e-46 Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK S + K S S+ SNG K +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 30 FTGLKSVSAFPVTRKSSNDLST-VPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2) HSP 1 Score: 183.341 bits (464), Expect = 1.183e-45 Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = 3 Query: 315 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 SNG + +CM+ W P+ KKFE LSYLP L+ +AKE+DY+L+ WIPCLEF+ E G+VHR+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC+SF+ KP Sbjct: 52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKP 179
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.183e-45 Identity = 82/153 (53.59%), Postives = 111/153 (72.55%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK + + K ++ +S SNG + +CM+ W P KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE P YYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+IR + F+N +Q QC+SF+ KP Sbjct: 26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.018e-45 Identity = 79/153 (51.63%), Postives = 114/153 (74.51%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK ++ + K+++ ++ SN K +CMK W P+ +KFE LSYLP +S++ ++KE DY+L+ GW+PC+EFD G+V+REN + PG+YDGRYWTMWKLPMFGC DSSQ++ EI+E KK YP+A+IR + F+N +Q QC+SF+ KP Sbjct: 28 FTGLKSSAGFPITRKNNVDITT-LASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.018e-45 Identity = 85/170 (50.00%), Postives = 120/170 (70.59%), Query Frame = 3 Query: 189 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVK-DSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 P M++S T + + GLK T A LP+ S + +VSNG + RCM+ W KKFE LSYLP LS +++ K++DY+++ W+PCLEF +VG+V RE++ PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+ +P Sbjct: 3 PAVMASSATTV----APFQGLKST--AGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRP 166
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 2.636e-45 Identity = 81/151 (53.64%), Postives = 107/151 (70.86%), Query Frame = 3 Query: 246 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 GLK S A PV + +NG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.443e-45 Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 3 Query: 246 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 GLK S PV + SNG + +CM+ W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 3.443e-45 Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = 3 Query: 315 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 SNG + +CM+ W P KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE P YYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+IR + F+N +Q QC+SF+ KP Sbjct: 50 SNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177 The following BLAST results are available for this feature:
BLAST of CX675482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675482 ID=CX675482; Name=CX675482; organism=Citrus sinensis; type=EST; length=749bpback to top |