CX675482
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 176.407 bits (446), Expect = 1.446e-43 Identity = 81/153 (52.94%), Postives = 111/153 (72.55%), Query Frame = 3 Query: 240 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK T A LPV + S VSNG + +CM+ W KKFE LSYLP L+ + + K+I+Y+L+ W+PCLEF +VG+V+REN + PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP+A++R + F+N +Q Q +SF+ KP Sbjct: 16 FQGLKST--AGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKP 166
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.467e-43 Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = 3 Query: 303 SKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + SNG + +CM W P+ KKFE LSYLP LS++S+ KE+ Y+L GW+PCLEF+ G+V+RE+ PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+ KP Sbjct: 47 TSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.563e-42 Identity = 80/153 (52.29%), Postives = 108/153 (70.59%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK T K + +S T SNG K +CMK W + KKFE LSYLP L+ + +A E++Y+L+ GWIPCLEF+ E G V+RE++++PGYYDGRYWTMWKLPMFGC D++Q+L E+ E K +P+ Y R + F+N +Q QC+SFL KP Sbjct: 28 FTGLKSTPVFPTTRKTNSDITSIT-SNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKP 179
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.563e-42 Identity = 79/153 (51.63%), Postives = 106/153 (69.28%), Query Frame = 3 Query: 240 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK TS A + + + SNG + +CM+ W P K +E LSYLP L+ + +AKE++Y+L+KGW+PCLEF+ E G V+RE + PGYYDGRYWTMWKLPMFGC D+ Q+L E+ E KAYP+ Y R + F+N +Q QC+SFL KP Sbjct: 28 FTGLKSTS-AFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKP 179
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.016e-41 Identity = 70/128 (54.69%), Postives = 96/128 (75.00%), Query Frame = 3 Query: 315 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 SNG + +CM+ W PI KKFE LSYLP L+ D + KE++Y+L+KGW+PCLEF+ + G+V+ E++K P YYDGRYWTMWKLPMFG D +Q++ E+ E AYP A++R + FNN +Q QC+SF+ P Sbjct: 6 SNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 5.144e-41 Identity = 79/160 (49.38%), Postives = 105/160 (65.62%), Query Frame = 3 Query: 216 TAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 ++ A + + GLK T A LPV S VSNG + RCM+ W NKKFE LSYLP L+ + + K++DY+L+ W+PCLEF + G+V+RENS P YYDGRYWTMWKLPMFGC D+SQ+ E+QE +YP L F+N +Q Q ++F+ KP Sbjct: 8 SSATAAAPFQGLKST--ASLPVARRSTTSLAKVSNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYPELR-AILGFDNIRQTQWLTFIAYKP 164
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 1.146e-40 Identity = 77/153 (50.33%), Postives = 107/153 (69.93%), Query Frame = 3 Query: 240 YLGLKPTSKALLPV-KDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 + GLK T A LPV + S S +VSNG + RCM+ W KKFE LSYLP LS + + K++DY+++ W+PCLEF +VG++ RE++ PGYYDGRYWTMWKLPMFGC +Q++ E++E +K YP+ Y R + F+N +Q Q +SF+ KP Sbjct: 16 FQGLKST--AGLPVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFRKVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKP 166
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 9.080e-38 Identity = 82/173 (47.40%), Postives = 108/173 (62.43%), Query Frame = 3 Query: 198 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 ++ S +A VA ++P + AL P A + V+ ++ M W P+NNK FE SYLP LSD+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL+Q+P Sbjct: 5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.186e-37 Identity = 81/173 (46.82%), Postives = 108/173 (62.43%), Query Frame = 3 Query: 198 MSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV--GYVHRENSKMPG-----YYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 ++ S +A VA ++P + AL P A + V+ ++ M W P+NNK FE SYLP L+D+ IA ++DY++ GWIPCLEF E YV E++ G YYD RYWTMWKLPMFGC D Q+L EI C KA+P+AY+R +AF+NQKQ Q M FL+Q+P Sbjct: 5 IAKSSVSAAVARPARSSVRPMA-ALKP-----AVKAAPVAAPAQANQMMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
BLAST of CX675482 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 2.023e-37 Identity = 75/147 (51.02%), Postives = 98/147 (66.67%), Query Frame = 3 Query: 276 PVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 P S +W ++ G K MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF++Q+P Sbjct: 691 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 834 HSP 2 Score: 155.221 bits (391), Expect = 3.451e-37 Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 3 Query: 339 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF++Q+P Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 260 HSP 3 Score: 155.221 bits (391), Expect = 3.451e-37 Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 3 Query: 339 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF++Q+P Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 404 HSP 4 Score: 155.221 bits (391), Expect = 3.451e-37 Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 3 Query: 339 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF++Q+P Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 691 HSP 5 Score: 155.221 bits (391), Expect = 3.451e-37 Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 3 Query: 339 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF++Q+P Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1122 HSP 6 Score: 155.221 bits (391), Expect = 3.451e-37 Identity = 70/126 (55.56%), Postives = 90/126 (71.43%), Query Frame = 3 Query: 339 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF++Q+P Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266 HSP 7 Score: 154.066 bits (388), Expect = 7.687e-37 Identity = 74/147 (50.34%), Postives = 97/147 (65.99%), Query Frame = 3 Query: 276 PVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 P S +W ++ G K MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD YWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R AF++ KQ Q +SF++Q+P Sbjct: 404 PSGSSSSWGMAAMT-GEKD--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 547 HSP 8 Score: 152.91 bits (385), Expect = 1.713e-36 Identity = 71/126 (56.35%), Postives = 91/126 (72.22%), Query Frame = 3 Query: 339 MKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEF--DEVGYVHRENS-----KMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 695 MK WNP+NNKKFE SYLP LSD IAK++D ++ KG PCLEF E ++ +N+ GYYD RYWTMWKLPMFGC D+SQ+L EI EC++AYP Y+R LAF++ KQ Q +SF++Q+P Sbjct: 854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRP 978 The following BLAST results are available for this feature:
BLAST of CX675482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675482 ID=CX675482; Name=CX675482; organism=Citrus sinensis; type=EST; length=749bpback to top |