CX675481

Overview
NameCX675481
Unique NameCX675481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.157e-46
Identity = 86/174 (49.43%), Postives = 119/174 (68.39%), Query Frame = -3
Query:  123 MSASIFTAPVAGSG-------YLGLKPTSKALLPVKDSIAWSSKTV-SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 620
            M +S+ TA  A          ++GLK  S +  PV    A    T+ SNG + +CMK W  +  KKFE LSYLP+LS +S+ K+I+Y+++ GW+PCLEF   G+V R+N+K PGYYDGRYWTMWKLPMFGC  ++Q++ E  ECKK YP A+IR + F+N +Q QC+SF+++KP
Sbjct:    7 MLSSVATAACAAPAQASMVAPFVGLK--SASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.429e-46
Identity = 81/153 (52.94%), Postives = 112/153 (73.20%), Query Frame = -3
Query:  123 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 578
            + GLK  +   +  K ++  +S   SNG + +CM+ W PIN KK+E LSYLP LS + +  EI+Y+LK GW+PCLEF+ E G+V+RE+   PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A++R + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.261e-46
Identity = 83/153 (54.25%), Postives = 109/153 (71.24%), Query Frame = -3
Query:  123 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 578
            + GLK  S   +  K S   S+   SNG K +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   30 FTGLKSVSAFPVTRKSSNDLST-VPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.209e-45
Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = -3
Query:  123 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 503
            SNG + +CM+ W P+  KKFE LSYLP L+   +AKE+DY+L+  WIPCLEF+ E G+VHR+ S +P YYDGRYWTMWKLPMFGC DS+Q+L E++ CKK YPNA+IR + F+N +Q QC+SF+  KP
Sbjct:   52 SNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKP 179          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.209e-45
Identity = 82/153 (53.59%), Postives = 111/153 (72.55%), Query Frame = -3
Query:  123 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 578
            + GLK  +   +  K ++  +S   SNG + +CM+ W P   KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE    P YYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+IR + F+N +Q QC+SF+  KP
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.063e-45
Identity = 79/153 (51.63%), Postives = 114/153 (74.51%), Query Frame = -3
Query:  123 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 578
            + GLK ++   +  K+++  ++   SN  K +CMK W P+  +KFE LSYLP +S++ ++KE DY+L+ GW+PC+EFD   G+V+REN + PG+YDGRYWTMWKLPMFGC DSSQ++ EI+E KK YP+A+IR + F+N +Q QC+SF+  KP
Sbjct:   28 FTGLKSSAGFPITRKNNVDITT-LASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.063e-45
Identity = 85/170 (50.00%), Postives = 120/170 (70.59%), Query Frame = -3
Query:  123 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVK-DSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 629
            P  M++S  T     + + GLK T  A LP+   S +    +VSNG + RCM+ W     KKFE LSYLP LS +++ K++DY+++  W+PCLEF +VG+V RE++  PGYYDGRYWTMWKLPMFGC D++Q+LNE++E KK YP+AY+R + F+N +Q QC+SF+  +P
Sbjct:    3 PAVMASSATTV----APFQGLKST--AGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFSKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRP 166          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.694e-45
Identity = 81/151 (53.64%), Postives = 107/151 (70.86%), Query Frame = -3
Query:  123 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 572
            GLK  S A  PV       +   +NG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   29 GLK--SVAAFPVTKKNNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.519e-45
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = -3
Query:  123 GLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEV-GYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 572
            GLK  S    PV       +   SNG + +CM+ W P+  KKFE LSYLP LS++S+ KE+ Y+L  GW+PCLEF+   G+V+RE+   PGYYDGRYWTMWKLPMFGC D SQ++ E++E KKAYP A+IR + F+N +Q QC+SF+  KP
Sbjct:   30 GLKSVSA--FPVTRKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX675481 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.519e-45
Identity = 77/128 (60.16%), Postives = 100/128 (78.12%), Query Frame = -3
Query:  123 SNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFLIQKP 503
            SNG + +CM+ W P   KK+E LSYLP L+D+ + KEI+Y+L KGW+PCLEF+ E G+V+RE    P YYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYPNA+IR + F+N +Q QC+SF+  KP
Sbjct:   50 SNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKP 177          
The following BLAST results are available for this feature:
BLAST of CX675481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS5_FRIAG4.157e-4649.43Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS8_NICPL5.429e-4652.94Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS6_MESCR9.261e-4654.25Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_GOSHI1.209e-4560.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_PETHY1.209e-4553.59Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_CUCSA2.063e-4551.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT2.063e-4550.00Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_MESCR2.694e-4553.64Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_MESCR3.519e-4553.64Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_PETHY3.519e-4560.16Ribulose bisphosphate carboxylase small chain SSU8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62E08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62E08-J16-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675481 ID=CX675481; Name=CX675481; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTATGATCAAGTCTTTATTATTTAAAACGAAAAGCATCTCCATAA
TCAAACAAGCTGCATTATAGAATTCAACCAAACAAAGTGAGAGAAGTGCT
TTTAGGTGCTAGTGGTGGTGGTTGGTTTCTGGATGAGAAAGGACATGCAC
TGACCCTGTTTCTGATTGTTAAATGCCAAGCAGCGAATATAAGCATTTGG
GTATGCTTTTTTGCACTCTTGTATTTCATTCAGGATTTGAGATGAATCAT
TGCATCCAAACATTGGCAACTTCCACATTGTCCAATACCTCCCATCATAA
TACCCTGGCATTTTGCTATTCTCCCTGTGCACATATCCCACCTCATCAAA
TTCAAGGCAAGGGATCCATCCCTTTTTGAGCATGTAGTCAATCTCCTTTG
CAATTGAATCATCCGAGAGCGATGGCAGGTAGGAGAGGGCCTCAAACTTT
TTGTTATTGATTGGATTCCATGTCTTCATGCATCGAGTTTTTGAACCGTT
TGAGACTGTTTTGCTGCTCCATGCAATGGAATCCTTAACTGGAAGCAAAG
CTTTCGATGTGGGTTTTAGGCCAAGATAGCCAGAACCAGCAACTGGAGCT
GTAAAGATGCTTGCAGACATCTTCTTCGGGCACTGTTTCAAGAAACAAGA
TAGTTAAAAGAGAGAGGCAACACTTAAGACCGAGATAGCAAAAGAGTAAT
AATTAATTATTTTAGTTCTCAAGGCAATGGAAACCGTTCAAGTAAAGGAC
AAAAGGAGTT
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