CK938107

Overview
NameCK938107
Unique NameCK938107
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Developing fruit albedo at 80 DAFB in pTriplEx2 vectorcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 5.961e-69
Identity = 125/171 (73.10%), Postives = 152/171 (88.89%), Query Frame = 2
Query:  245 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757
            D+KLF +W  E + ++DISL+DYI V+   +A Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++FRNIK+IAECLADE INAA+GSS
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSS 191          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.785e-69
Identity = 126/171 (73.68%), Postives = 150/171 (87.72%), Query Frame = 2
Query:  245 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757
            ++KLF RW  +D+ ++DISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVKHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIKT+AECLADE INAAKGSS
Sbjct:   42 EIKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSS 211          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 255.758 bits (652), Expect = 1.918e-67
Identity = 125/179 (69.83%), Postives = 151/179 (84.36%), Query Frame = 2
Query:  221 QDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757
            ++  Q Q ++KLFN+W+FE+V+V D SL DY+ V   +   +V HTAGRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+KH ++II++LTDQNPIQV+VDA+ N+GPRED TR+G  G  RRQAVD+SPLRRVNQAI LLT GARE+AFRNIKTIAE LA+E INAAKGSS
Sbjct:   31 EEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQV---RQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSS 206          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 5.579e-67
Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 2
Query:  353 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757
            HTAGRY  KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLTTGARESAFRNIKTIAECLADE INAAKGSS
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 135          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.774e-64
Identity = 124/170 (72.94%), Postives = 145/170 (85.29%), Query Frame = 2
Query:  248 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757
            +KLFN++ FE V+V DISL DYI +    N   +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E INAAKGSS
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIG---NGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSS 184          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 5.774e-64
Identity = 124/170 (72.94%), Postives = 145/170 (85.29%), Query Frame = 2
Query:  248 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757
            +KLFN++ FE V+V DISL DYI +    N   +PHTAGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV   GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E INAAKGSS
Sbjct:   18 IKLFNKFPFEGVEVKDISLVDYITIG---NGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSS 184          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.204e-61
Identity = 116/170 (68.24%), Postives = 141/170 (82.94%), Query Frame = 2
Query:  245 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGS 754
            +V LF +W++  V   DISL DYI V   K   + PH+AGRY+  RFRKAQCPIVERL NS+MM GRN GKK+MAVRI++ A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+T+AECLADE INA+KGS
Sbjct:    4 EVALFGKWSYSGVTCPDISLQDYICV---KKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGS 170          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 4.302e-43
Identity = 81/125 (64.80%), Postives = 105/125 (84.00%), Query Frame = 2
Query:  374 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAK 748
            +K FRK QCPIVERL   +M HG+N+GKKL+A+R+V+ + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL  G R  AFRN K++AECLADE +NA+K
Sbjct:    2 IKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASK 126          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 7.593e-40
Identity = 84/168 (50.00%), Postives = 114/168 (67.86%), Query Frame = 2
Query:  248 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKG 751
            ++LF +W++  V+V D SL  YI ++      ++PHT GR+  +RF KA+ PIVERL N LM  GRN GKK +A  IVK A +II+  T +NPIQV+V A+ NS PRED T+I   G+  R +VD++P RRV+QA+  +  GAR+ AF N K I ECLA+E I AA+G
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARG 184          
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.167e-38
Identity = 84/169 (49.70%), Postives = 114/169 (67.46%), Query Frame = 2
Query:  245 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKG 751
            ++K+F RW+ +DV V D  L +YI +       YVPHTAGRY+ ++F KA+  IVERL N +M    N GKKL A++IV++A EII   T QNPIQV+VDA+ N+GPRED TRI   G+V  Q+VD S LRR++ A+  +  GA  +A ++ K I E LA+E I AA+G
Sbjct:    5 EIKVFGRWSTKDVVVKDPGLRNYINL----TPIYVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPREDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKKPIEEALAEEIIAAARG 169          
The following BLAST results are available for this feature:
BLAST of CK938107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_PODCA5.961e-6973.1040S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]
RS5B_DROME7.785e-6973.6840S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_YEAST1.918e-6769.8340S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5_NICPL5.579e-6796.3040S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5B_SCHPO5.774e-6472.9440S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO5.774e-6472.9440S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS5_DICDI1.204e-6168.2440S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5_ENTHI4.302e-4364.8040S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]
RS7_AERPE7.593e-4050.0030S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS7_METJA4.167e-3849.7030S ribosomal protein S7P OS=Methanocaldococcus ja... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004478_A01 Developing fruit albedo at 80 DAFB in pTriplEx2 vector Citrus sinensis cDNA clone A80DAB0002_IVF_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK938107 ID=CK938107; Name=CK938107; organism=Citrus sinensis; type=EST; length=758bp
GCGGGGGCCTCNNNACACTCAGAAGAGAACTCAGCGAGCGGCAGCCGATT
CTTATTATTCCCTTTTCAAACCCCTTCAGACAAACTAACGCACGCTTTCT
TTTTCTTCCGCTTTCTTCTCCATCGCTGATCATCTTGATTGCTTTTTTAG
TTCGAAAAACATTGTCTTTTAATATTTTGTTGTGTTGGTGAGAACGGCGA
CTGCTGTAGTGACACAATCTCAAGACCCATCACAGCCTCAATACGATGTG
AAACTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTCAATGACATTTC
ATTGAGTGATTATATTGGAGTCCAAGCAGCAAAAAATGCAACCTATGTAC
CTCACACAGCTGGGAGGTACTCAGTGAAGCGGTTTAGGAAGGCACAGTGC
CCAATTGTTGAGAGGCTCACAAACTCACTGATGATGCATGGAAGAAACAA
TGGCAAGAAATTGATGGCCGTCAGGATTGTCAAGCACGCCATGGAAATCA
TTCACCTTTTGACCGACCAGAACCCAATTCAGGTCATTGTTGATGCTGTC
ATCAACAGTGGTCCAAGGGAAGACGCTACCCGCATTGGATCTGCTGGTGT
TGTTAGGCGTCAGGCAGTTGATATTTCCCCATTGCGCCGTGTGAATCAAG
CAATCTATTTGCTCACCACTGGTGCTCGTGAATCCGCTTTCCGTAATATC
AAGACTATTGCGGAATGTTTGGCCGATGAACNCATTAATGCTGCCAAGGG
TTCATCTA
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