CK938107
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1) HSP 1 Score: 260.766 bits (665), Expect = 5.961e-69 Identity = 125/171 (73.10%), Postives = 152/171 (88.89%), Query Frame = 2 Query: 245 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757 D+KLF +W E + ++DISL+DYI V+ +A Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++FRNIK+IAECLADE INAA+GSS Sbjct: 22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSS 191
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1) HSP 1 Score: 260.381 bits (664), Expect = 7.785e-69 Identity = 126/171 (73.68%), Postives = 150/171 (87.72%), Query Frame = 2 Query: 245 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757 ++KLF RW +D+ ++DISL DYI V+ K A Y+PH+AGRY+ KRFRKAQCPIVERLT+ LMM GR+NGKKL+A RIVKHA EIIHLLT +NP+QV V+A++NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+L+ TGARE+AFRNIKT+AECLADE INAAKGSS Sbjct: 42 EIKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLICTGAREAAFRNIKTVAECLADELINAAKGSS 211
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3) HSP 1 Score: 255.758 bits (652), Expect = 1.918e-67 Identity = 125/179 (69.83%), Postives = 151/179 (84.36%), Query Frame = 2 Query: 221 QDPSQPQYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757 ++ Q Q ++KLFN+W+FE+V+V D SL DY+ V + +V HTAGRY+ KRFRKAQCPI+ERLTNSLMM+GRNNGKKL AVRI+KH ++II++LTDQNPIQV+VDA+ N+GPRED TR+G G RRQAVD+SPLRRVNQAI LLT GARE+AFRNIKTIAE LA+E INAAKGSS Sbjct: 31 EEVQQAQTEIKLFNKWSFEEVEVKDASLVDYVQV---RQPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPREDTTRVGGGGAARRQAVDVSPLRRVNQAIALLTIGAREAAFRNIKTIAETLAEELINAAKGSS 206
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1) HSP 1 Score: 254.218 bits (648), Expect = 5.579e-67 Identity = 130/135 (96.30%), Postives = 131/135 (97.04%), Query Frame = 2 Query: 353 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757 HTAGRY KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTD NPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRV+QAIYLLTTGARESAFRNIKTIAECLADE INAAKGSS Sbjct: 1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVSQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 135
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 5.774e-64 Identity = 124/170 (72.94%), Postives = 145/170 (85.29%), Query Frame = 2 Query: 248 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757 +KLFN++ FE V+V DISL DYI + N +PHTAGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E INAAKGSS Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIG---NGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSS 184
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 5.774e-64 Identity = 124/170 (72.94%), Postives = 145/170 (85.29%), Query Frame = 2 Query: 248 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGSS 757 +KLFN++ FE V+V DISL DYI + N +PHTAGR+ KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHA EII LLTDQNP+QV+VDAV GPRED+TRIGSAG VRRQAVD+SPLRRVNQA+ L+T GARE+AFRN+K+I+ECLA+E INAAKGSS Sbjct: 18 IKLFNKFPFEGVEVKDISLVDYITIG---NGQPLPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSS 184
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.204e-61 Identity = 116/170 (68.24%), Postives = 141/170 (82.94%), Query Frame = 2 Query: 245 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKGS 754 +V LF +W++ V DISL DYI V K + PH+AGRY+ RFRKAQCPIVERL NS+MM GRN GKK+MAVRI++ A EII+LLTD+NP+QV+V+AV+NSGPRED+TRIGSAG VRRQAVD+SP+RRVN A+YLLT G R +AFRNI+T+AECLADE INA+KGS Sbjct: 4 EVALFGKWSYSGVTCPDISLQDYICV---KKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPREDSTRIGSAGTVRRQAVDVSPMRRVNHAVYLLTQGTRAAAFRNIRTVAECLADELINASKGS 170
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 4.302e-43 Identity = 81/125 (64.80%), Postives = 105/125 (84.00%), Query Frame = 2 Query: 374 VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAK 748 +K FRK QCPIVERL +M HG+N+GKKL+A+R+V+ + EIIHLLT++NPIQV+VDA+IN+ PRED+TR+G+ G VR QAVD+SPLRR+N A+YLL G R AFRN K++AECLADE +NA+K Sbjct: 2 IKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPREDSTRVGTGGNVRGQAVDVSPLRRINHALYLLIMGCRCGAFRNSKSLAECLADEIVNASK 126
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3) HSP 1 Score: 164.081 bits (414), Expect = 7.593e-40 Identity = 84/168 (50.00%), Postives = 114/168 (67.86%), Query Frame = 2 Query: 248 VKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKG 751 ++LF +W++ V+V D SL YI ++ ++PHT GR+ +RF KA+ PIVERL N LM GRN GKK +A IVK A +II+ T +NPIQV+V A+ NS PRED T+I G+ R +VD++P RRV+QA+ + GAR+ AF N K I ECLA+E I AA+G Sbjct: 21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPREDTTKITYGGITYRVSVDVAPQRRVDQALKFIADGARQCAFNNPKPIEECLAEELILAARG 184
BLAST of CK938107 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.167e-38 Identity = 84/169 (49.70%), Postives = 114/169 (67.46%), Query Frame = 2 Query: 245 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADEXINAAKG 751 ++K+F RW+ +DV V D L +YI + YVPHTAGRY+ ++F KA+ IVERL N +M N GKKL A++IV++A EII T QNPIQV+VDA+ N+GPRED TRI G+V Q+VD S LRR++ A+ + GA +A ++ K I E LA+E I AA+G Sbjct: 5 EIKVFGRWSTKDVVVKDPGLRNYINL----TPIYVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPREDTTRISYGGIVYLQSVDCSSLRRIDVALRNIALGAYMAAHKSKKPIEEALAEEIIAAARG 169 The following BLAST results are available for this feature:
BLAST of CK938107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK938107 ID=CK938107; Name=CK938107; organism=Citrus sinensis; type=EST; length=758bpback to top |