FC921784

Overview
NameFC921784
Unique NameFC921784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            G  + VTL+PGDGIGP ++ +V ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+NLLLR+  D
Sbjct:   29 GGVQTVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3A_MOUSE (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Mus musculus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 37/91 (40.66%), Postives = 56/91 (61.54%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV-----HGDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            G  + VTL+PGDGIGP ++ +V ++ +A  AP+ +E+  V      G    +P E  +S+ KNK+ L+G L TP+  G  S+NLLLR+  D
Sbjct:   29 GGVQTVTLIPGDGIGPEISASVMKIFDAAKAPIQWEERNVTAIQGPGGKWMIPPEAKESMDKNKMGLKGPLKTPIAAGHPSMNLLLRKTFD 119          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH2_YEAST (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=IDH2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 3
Query:   90 TYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVH----GDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRR 362
            T  P P  G    V+ + GDGIGP ++ +V+++  A + P+ +E C+V       +  +P+  ++SI KN V L+G LATP+G G  SLNL LR+
Sbjct:   27 TGKPNPSTGK-YTVSFIEGDGIGPEISKSVKKIFSAANVPIEWESCDVSPIFVNGLTTIPDPAVQSITKNLVALKGPLATPIGKGHRSLNLTLRK 120          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH3A_DROME (Probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Drosophila melanogaster GN=l(1)G0156 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.701e-12
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   72 TPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEV----HGDMK-RVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            TP  S +Y         + VTL+PGDGIGP ++ AV+++  A + P+ +E  +V      D K  +P+  I S+  NK+ L+G L TP+G G  SLNL LR+E +
Sbjct:   36 TPAASRSY-----SSGTKKVTLIPGDGIGPEISAAVQKIFTAANVPIEWEAVDVTPVRGPDGKFGIPQAAIDSVNTNKIGLKGPLMTPVGKGHRSLNLALRKEFN 135          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH6_ARATH (Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial OS=Arabidopsis thaliana GN=IDH6 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.326e-11
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 3
Query:   30 QILSKSSDQCSPFLTPTRSVTYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKR-----VPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRRELD 371
            QIL  SS    PF++ +R+           P   TL PGDGIGP +  +V+QV  A    + +++  V  ++       +  + ++S+ KNKV L+G +ATP+G G  SLNL LR+EL+
Sbjct:   18 QILGTSSSSSGPFISVSRAFF-----SSSTPIKATLFPGDGIGPEIAESVKQVFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKNKVGLKGPMATPIGKGHRSLNLTLRKELN 131          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH2_KLULA (Isocitrate dehydrogenase [NAD] subunit 2, mitochondrial OS=Kluyveromyces lactis GN=IDH2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.343e-11
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 3
Query:   90 TYMPRPGDGAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVH----GDMKRVPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRR 362
            T  P P  G    V+ + GDG+GP ++ +V+ +  A   P+ +E C+V       +  +P+  + SI KN + L+G LATP+G G  SLNL LR+
Sbjct:   26 TGKPNPKTGK-YTVSFIEGDGVGPEISKSVKAIFSAAKVPIEWESCDVSPIFVNGLTTIPDPAVASINKNLIALKGPLATPIGKGHRSLNLTLRK 119          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH_THET8 (Isocitrate dehydrogenase [NADP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=icd PE=1 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  123 RAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKR------VPEEVIKSIKKNKVCLEGGLATPMGGGVSSLNLLLRR 362
            + +T++PGDGIGP    A  +V+EA  AP+ +E  E    + R      VP+E I+SI+K +V L+G L TP+G G  S N+ LR+
Sbjct:   20 KLITVIPGDGIGPECVEATLKVLEAAKAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGYGEKSANVTLRK 105          
BLAST of FC921784 vs. ExPASy Swiss-Prot
Match: IDH1_SCHPO (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Schizosaccharomyces pombe GN=idh1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 3
Query:  114 GAPRAVTLLPGDGIGPLVTGAVEQVMEAMHAPVYFEKCEVHGDMKR------VPEEVIKSIKKNKVCLEGGLATPM-GGGVSSLNLLLRRELD 371
            G    VTL+PGDGIG   + AV ++ +  + P+ FE+ +V G  K          E I+S+K+NKV L+G L TP   GG +S N+ LR+ELD
Sbjct:   18 GGKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNNKSSGDALHEAIQSLKRNKVGLKGILFTPFEKGGHTSFNVALRKELD 110          
The following BLAST results are available for this feature:
BLAST of FC921784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
IDH3A_RAT3.928e-1240.66Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MOUSE3.928e-1240.66Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH2_YEAST3.928e-1238.95Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH3A_DROME6.701e-1239.05Probable isocitrate dehydrogenase [NAD] subunit al... [more]
IDH6_ARATH3.326e-1136.13Isocitrate dehydrogenase [NAD] catalytic subunit 6... [more]
IDH2_KLULA4.343e-1136.84Isocitrate dehydrogenase [NAD] subunit 2, mitochon... [more]
IDH_THET85.673e-1141.86Isocitrate dehydrogenase [NADP] OS=Thermus thermop... [more]
IDH1_SCHPO7.409e-1141.94Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionC06052C10T7 RindPdigS Citrus sinensis cDNA clone C06052C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921784 ID=FC921784; Name=FC921784; organism=Citrus sinensis; type=EST; length=373bp
CGCGGCGGCGGTCCCTACCGATCCTCAAACAAATACTTTCAAAGTCTTCC
GACCAGTGCTCCCCGTTCCTCACCCCGACCCGATCCGTAACCTACATGCC
GCGACCCGGAGATGGCGCTCCACGCGCAGTGACTCTGCTTCCAGGCGACG
GAATTGGACCGTTAGTGACCGGTGCCGTCGAGCAAGTAATGGAAGCGATG
CACGCGCCAGTATACTTCGAGAAGTGCGAGGTCCACGGGGACATGAAGCG
AGTGCCTGAAGAAGTGATCAAATCGATTAAGAAGAATAAGGTTTGCCTGG
AAGGCGGCCTGGCCACGCCGATGGGCGGCGGGGTGAGTTCATTGAATTTG
CTGTTGAGGAGGGAGTTGGATTC
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