CX675421

Overview
NameCX675421
Unique NameCX675421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig755 contig Csv1_Contig755:387..1288. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GALM_STRTR (Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.037e-16
Identity = 61/257 (23.74%), Postives = 111/257 (43.19%), Query Frame = -2
Query:  146 TLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPISLAQHTYWNLAGHHSGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDF--TTEKKIGASINEVPGLGYDHNYVLDCGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYT---XXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNFPSVVVRPGESYQHTMLFEF 901
            +LP N+  N LHGG KG     W        +     F  R     +G+PGDV+V  +Y L ++  + +  EA    + T  +   H Y+NL+     ++  H +QI+  +   +D   +PTG+ + V  T +DF  TT+       N     G+D  +V+  G     +K  A L +  +   + +++N  G+  +T                   +   + +E Q  P+A+N   F  +++  G S  + + F++
Sbjct:   94 SLPKNEGDNCLHGGPKGMQVQNWNYVTNLNDDYVETKFIRRLYSSVDGFPGDVTVSISYRLNNNNRLTILFEAFDVTESTVFNPTNHVYFNLSDKQ--DLSSHELQIYSDYRLELDSELIPTGQKINVDETNYDFRKTTDLLPRIEANN----GFDDAFVVG-GGTCDHVKEVAILHDKESGDGIEIFSNRNGLVIFTMDDIEDNIYFARDKGKMAKRREAIAMEAQTLPDAVNHKGFGDIILDKGHSVNYEIGFQY 343          
BLAST of CX675421 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.907e-14
Identity = 71/277 (25.63%), Postives = 121/277 (43.68%), Query Frame = -2
Query:  101 SLHGGFKGFDKVVW--EVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKP---TPISLAQHTYWNLAGHH---SGNILDHSIQIWGSHITPVDQNTVPTGEIMPVKGTPFDFTTEKKIGASINEVPGLGYDHNYVLD-------CGEEKSGLKHAAKLKEPSTSRVLNLWTNAPGMQFYTXXXXXXXXXXXXXXXXKHSGVCLETQGFPNAINQPNF-PSVVVRPGESY---QHTMLFEFSVE*TISLLKSSSWN 874
            +LHGG  GFDK  +   +A   +  N ++ F    +DG  G+P D+  +  YT+ +++        +PE      T ++L  H+YWNLA  +    G I+  +  +   ++    + ++PTG+I+  +    D T   K+       P + +D+ +++D           K  LK+  ++  PS    L + T  P  Q YT                  SG C+ET  F NA+N   +   V++R GE Y       L+   +E     L S+S+N
Sbjct:  451 TLHGGNNGFDKQFFLGPIARQYEDYN-TLEFILVDKDGNNGFPSDLETLVKYTIKNNSLEIEYKSVIPEYSKLNVTAVNLTNHSYWNLASPNKTIDGTIIKSTTNV---YLKVNSETSLPTGDIVEWQN---DITKPTKLD------PNISFDNCFIVDREASKFCLDTRKYSLKNIVEVIHPSVPVKLVVSTTEPAFQLYT------GDGNDICEFQSRSGFCVETGRFINALNNEKWSKQVILRKGEVYGARSKFSLYAQDLEENKHFLDSASYN 708          
The following BLAST results are available for this feature:
BLAST of CX675421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GALM_STRTR2.037e-1623.74Aldose 1-epimerase OS=Streptococcus thermophilus G... [more]
GAL10_SCHPO1.907e-1425.63Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B05-D10-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675421 ID=CX675421; Name=CX675421; organism=Citrus sinensis; type=EST; length=902bp
TTTCATACAATTGTCTTATAATATTATTTTATTAAGAGATTTAGCCAACA
TCCAAACATCAGTACTCGCCATGGTATGCAAACCCATGAACAATAACCTT
ATTCCAAGAACTACTCTTCAAGAGACTAATAGTTCACTCAACTGAAAACT
CAAACAACATAGTATGTTGGTAGCTCTCACCGGGTCGAACCACAACAGAA
GGGAAGTTAGGTTGATTTATGGCGTTAGGAAACCCCTGCGTCTCCAAGCA
GACACCTGAGTGCTTTCCATAAACTGCACCCCCCTTTCCAACAACTCCGT
TAACATAGTTACCAGTGTAAAACTGCATGCCTGGGGCATTGGTCCATAAA
TTAAGGACCCTTGAGGTTGATGGTTCCTTCAGTTTTGCAGCATGTTTCAG
ACCTGATTTCTCTTCTCCACAATCAAGAACATAGTTGTGATCATACCCTA
AACCAGGTACTTCATTGATTGATGCACCAATCTTTTTCTCAGTGGTGAAA
TCAAAAGGGGTGCCCTTGACTGGCATAATTTCTCCAGTTGGGACCGTGTT
CTGATCTACAGGAGTAATGTGTGATCCCCATATTTGAATTGAGTGGTCAA
GTATGTTCCCTGAATGATGGCCTGCTAAGTTCCAGTACGTGTGTTGAGCT
AAACTGATTGGGGTCGGCTTGTTTTCTGGAACTGCTTCCATGTCAAGCCT
CATTGTCGTGCTTGATGTTAGTGTGTAGGTTGCCATCACAGAAACATCCC
CTGGGTAACCTTCCTCGCCATCACGGCTGCGATACTTGAAAGTAATGGAA
GGGTTTTCACCTTTCTTATATTCTGCTACCTCCCAGACAACTTTATCAAA
ACCCTTGAACCCACCATGGAGACTGTTTGGTGGCTTGTTGATGGGCAAAG
TG
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