CX675420
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3) HSP 1 Score: 250.751 bits (639), Expect = 6.632e-66 Identity = 116/180 (64.44%), Postives = 145/180 (80.56%), Query Frame = -2 Query: 253 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 792 VRTD TYPAGFMDV+++ TNENFRL+YD KGRF +H I DEEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK NDT+K+DL + KIT+FIKFD G +V VTGGRN GR+G I ++E+H G F+ +HI+D+L + F TRL NVF IG+ KP++SLPKGKGIKLSI EE +R Sbjct: 76 VRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRITDEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKDSLDNTFVTRLNNVFVIGEQGKPYISLPKGKGIKLSIAEERDRR 255
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_CARGR (40S ribosomal protein S4 OS=Carabus granulatus GN=RpS4 PE=2 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 6.632e-66 Identity = 117/180 (65.00%), Postives = 145/180 (80.56%), Query Frame = -2 Query: 253 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 792 VRTD YP+GFMDV++I KT E FRL+YD KGRF +H I EEAK+KLCKV+ VQ G KGIP++ T+DGRTIRYPDP+IK NDTI+L++ +KI + IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FA RL NVF IGKG+K +VSLP+GKG+KLSI EE KR Sbjct: 76 VRTDPNYPSGFMDVITIEKTGEFFRLIYDVKGRFTIHRITAEEAKYKLCKVKRVQTGPKGIPFLVTHDGRTIRYPDPIIKVNDTIQLEIANSKIMDSIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHTFANRLNNVFIIGKGSKAYVSLPRGKGVKLSIAEERDKR 255
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4Y2_HUMAN (40S ribosomal protein S4, Y isoform 2 OS=Homo sapiens GN=RPS4Y2 PE=1 SV=3) HSP 1 Score: 248.44 bits (633), Expect = 3.292e-65 Identity = 115/180 (63.89%), Postives = 142/180 (78.89%), Query Frame = -2 Query: 253 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 792 VR D TYPAGF+DV+SI KT E+FRL+Y+TKG F +H I EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDT+++DL T KIT FIKFD GNV MV G N GRVG+I NRE+H GS + +H++DA G+ FATR+ N+F IG G KPW+SLP+GKGI+L+I EE KR Sbjct: 76 VRVDITYPAGFIDVISIEKTGEHFRLVYNTKGCFAVHRITVEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPLIKVNDTVQIDLGTGKITSFIKFDTGNVCMVIAGANLGRVGVITNRERHPGSCDVVHVKDANGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_CANAL (40S ribosomal protein S4 OS=Candida albicans GN=RPS4 PE=3 SV=1) HSP 1 Score: 248.054 bits (632), Expect = 4.299e-65 Identity = 120/181 (66.30%), Postives = 145/181 (80.11%), Query Frame = -2 Query: 253 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGTKPWVSLPKGKGIKLSIIEEARKR 792 VRTD TYPAGFMDV+++ TNE+FRL YD KG+F +H I EEA +KL KV+ VQ G+KG+PY+ T+DGRTIRYPDPLI+ANDT+K+DL T KI FIKFD G +VMVTGGRN GRVG+I +REK +G F+ +HI+DAL + F TRL NVF IG + KPWVSLPKGKGIKLSI EE +R Sbjct: 76 VRTDTTYPAGFMDVITLEATNEHFRLAYDVKGKFAVHRISAEEAVYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPLIRANDTVKIDLATGKIXSFIKFDTGRLVMVTGGRNLGRVGVIVHREKLEGGFDLVHIKDALENTFVTRLSNVFVIGTEAGKPWVSLPKGKGIKLSISEERDRR 256
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3) HSP 1 Score: 231.491 bits (589), Expect = 4.164e-60 Identity = 108/176 (61.36%), Postives = 135/176 (76.70%), Query Frame = -2 Query: 265 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEE 792 VRTD YPAGFMDV+SI KT ENFRLL+D KGRF L I EEAKFKL +V V+ G +GIPY++T DGRTIRYPDP I +DTIK+D+E+ KIT FI F+V N+ M+ GG N GRVG + +REKH GSF+ +H+ D GH+FATRL NVF IGK ++ +VSLP GKG++ S ++E Sbjct: 76 VRTDPNYPAGFMDVISIEKTKENFRLLFDPKGRFTLQRITPEEAKFKLARVTRVETGNQGIPYVHTDDGRTIRYPDPAISIHDTIKIDIESGKITAFIPFEVNNLCMIVGGHNLGRVGAVTHREKHPGSFDIVHVTDTAGHQFATRLSNVFIIGKASQTFVSLPAGKGVRRSRVDE 251
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_CAEEL (40S ribosomal protein S4 OS=Caenorhabditis elegans GN=rps-4 PE=1 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.526e-57 Identity = 109/180 (60.56%), Postives = 135/180 (75.00%), Query Frame = -2 Query: 253 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 792 VRT +P GFMDVV+I +TNE FR+LYDTKGR+ +H I+ EA FKLCKV+SV+ KG+P + T DGRTIRYPDP +K NDTI ++ T KIT+ +KF+ GN+ VTGGRN GRVGII +RE+ G+ + IHI+D+ GH FATR+ NVF IGKG K VSLP G GI+LSI EE KR Sbjct: 75 VRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKR 254
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_HORSE (40S ribosomal protein S4 (Fragment) OS=Equus caballus GN=RPS4 PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.614e-54 Identity = 97/138 (70.29%), Postives = 116/138 (84.06%), Query Frame = -2 Query: 379 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDA 792 VRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H I EEAK+KLCKVR + G KGIP++ T+D RTIRYPDPLIK NDTI++DLET KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA Sbjct: 57 VRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDA 194
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_TETTH (40S ribosomal protein S4 OS=Tetrahymena thermophila PE=1 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.705e-51 Identity = 97/180 (53.89%), Postives = 129/180 (71.67%), Query Frame = -2 Query: 253 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLSIIEEARKR 792 VR DK YP G MDVV I KT+++FR+LYDTKGRF L S+ EEAK+KL KV + G IPYI T+D RTIR+P+P IK DT+K DL NKI F + GNV + G N GRVGII++ EKH+GSF+ H++DA G+ FATRLGN+F +G+G K ++ LP G G++ +I+EE +++ Sbjct: 77 VRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKLYIELPSGDGVRETILEERKRK 256
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_ENCCU (40S ribosomal protein S4 OS=Encephalitozoon cuniculi GN=RPS4 PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.647e-27 Identity = 70/177 (39.55%), Postives = 107/177 (60.45%), Query Frame = -2 Query: 265 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKP-WVSLPKGKGIKLSIIEE 792 VRT+ +P G DVVSI KT E+FR+LY+ +F LH I EEA ++L KV + ++ +GIPYI + G +IR+ DP I TIK+ ET+K+ E+I V+ V+ G+ RGRVG+I N +G + D G+ F+ + IG+ ++ W++LPK +GI+ S +E+ Sbjct: 76 VRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKV-TKKYENQGIPYIVSSCGLSIRFCDPAIDLGYTIKISNETSKVIEYIVPGPDKVIFVSRGKARGRVGVI-NTISTQGKETVYGMTDFAGNTFSCTSKSCILIGESSENIWITLPKERGIRQSELEK 250
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METTH (30S ribosomal protein S4e OS=Methanobacterium thermoautotrophicum GN=rps4e PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.501e-22 Identity = 65/167 (38.92%), Postives = 92/167 (55.09%), Query Frame = -2 Query: 292 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGK 789 R + +P GFMDVVSIP+T + +R+L D +GR LH I +E A FKLCK+ + + G +N +DGR D + D +KL + +I E I F+ ++ +VTGGR+ G +G IK + S T I+ G F T VF IGK + +SLP GK Sbjct: 78 RKNYKFPVGFMDVVSIPRTGDVYRVLPDERGRLVLHPIDEENAGFKLCKIVNKTTIKGGRTQLNLHDGRNY-LSDDEFRVGDVVKLSIPEQEILERIPFEKDSLGLVTGGRHTGEIGKIKKINITRSSMPNTAVIETGAGKTFLTLKDYVFVIGK-DESVISLPGGK 242 The following BLAST results are available for this feature:
BLAST of CX675420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675420 ID=CX675420; Name=CX675420; organism=Citrus sinensis; type=EST; length=793bpback to top |