CX675420

Overview
NameCX675420
Unique NameCX675420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1465 contig Csv1_Contig1465:336..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.917e-21
Identity = 64/175 (36.57%), Postives = 96/175 (54.86%), Query Frame = -2
Query:  295 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 792
            VR D  +P GFMDV+ +  T E FR+L      F+LH I +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G + ++ GGRN GRVG++K+ +K  G   T + ++DA G+ F T L  VF IG   +P +SLP+G
Sbjct:   77 VRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.226e-19
Identity = 62/176 (35.23%), Postives = 92/176 (52.27%), Query Frame = -2
Query:  295 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGTKPWVSLPKG 792
            VR +  YP GFMDV+ I  T E +R+L      F LH I  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ +   ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T L  VF I     +PW+SLP+G
Sbjct:   77 VRRNYKYPVGFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.725e-18
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = -2
Query:  295 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 792
            VR D  +P G MDV+ I   N+ +R++        L  I  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I +++    G + +V+GGRN GRVG I +  K    + +I  ++D  G++F T L  +F IG   KP + LP+G
Sbjct:   77 VRRDYKFPVGVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV-EKPLIKLPEG 250          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.147e-17
Identity = 61/178 (34.27%), Postives = 94/178 (52.81%), Query Frame = -2
Query:  295 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 792
            VR +  YP G MDV+ I  T E +R++        L  I  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ +   +I  +I  D G +V+++GGRN GRVG    I K   +H+     + I+D  G++F T L  VF IGK  +P + LP+G
Sbjct:   77 VRKNYKYPVGLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.498e-17
Identity = 56/162 (34.57%), Postives = 86/162 (53.09%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R +  +P GFMDV+SIPK N+ FR+L D KGR  L  I ++++ FKL K+      + G   +N   GR I   D   K  D + L++   KI++ IKF+ G + ++TGG++   VG I   +  + S     + +     F T    VF +G+  KP +SL
Sbjct:   78 RKNHRFPVGFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKIDEIKITQSSKSNTVLMETEEGSFLTLARYVFVVGQ-DKPVISL 237          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.436e-17
Identity = 53/162 (32.72%), Postives = 85/162 (52.47%), Query Frame = -2
Query:  331 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG 792
            VR ++  P G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + +   +I   I F+VG +  +TGG++ G    I   E+     + + +++  G +F T    VF +G
Sbjct:   77 VRKEEKLPVGLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVG 236          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 59/169 (34.91%), Postives = 92/169 (54.44%), Query Frame = -2
Query:  301 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 792
            VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEAK K  ++ + +  +     +N +DG     ++   D   K + T+ + +   +I + + F+VG  V VT G+N  R G I++ R+   G  + + I+D  G  F T     F IGK  KP +SLP
Sbjct:   77 VRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKIVEVRQFPMGWPDVVTIEDENGELFDTLKEYAFVIGK-DKPEISLP 243          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.711e-17
Identity = 53/161 (32.92%), Postives = 86/161 (53.42%), Query Frame = -2
Query:  304 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 783
            D  +P GFMD++ IPKT E +R+L D KGR +L+ I  EE   KLCK+ +    + G   +N +DG+ +   +      D I L +  ++I E  +   G  V++TGG++ G +G +     ++ S   TI I+++   EF T     F +G+   P +SL
Sbjct:   80 DYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDA-PAISL 237          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = -2
Query:  304 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK--GTKPWVSL 792
            VR D  +P G  DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N +DG  I   +   K  D+I L +   ++ + +KF+ G +VM+TGG + G +G IK+ +  + S   +   +    +  T    VF +GK    KP + L
Sbjct:   72 VRKDYKFPVGLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSND-YKTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDL 233          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.221e-16
Identity = 57/170 (33.53%), Postives = 92/170 (54.12%), Query Frame = -2
Query:  301 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 792
            VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +GK  KP +SLP
Sbjct:   77 VRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLVLHPISEEEANIKPLRIRNKRMVKGAKVQLNFHDG--TNHLIPLTEKDNYFTSYTVLMKVPEREIMEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGK-DKPKISLP 243          
The following BLAST results are available for this feature:
BLAST of CX675420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RS4E_AERPE2.917e-2136.5730S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_HYPBU1.226e-1935.2330S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_DESK16.725e-1834.2930S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_STAMF1.147e-1734.2730S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_METST1.498e-1734.5730S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_METJA7.436e-1732.7230S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_PYRKO9.711e-1734.9130S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_METS39.711e-1732.9230S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_ARCFU4.820e-1631.5230S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_PYRHO8.221e-1633.5330S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B04-D8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675420 ID=CX675420; Name=CX675420; organism=Citrus sinensis; type=EST; length=793bp
GGGCCAAAAATTCATTGCCAATAATATTGCCGCTGATAAAATAAAAGAGT
CACCTGTTTCATCACAAAACTAAAATTGAAACCAGTATTAAAACTCAAAA
CTTTATGATAACTAGTATCACCAACAAGAAAATCAAACAAGCAATCACAA
AAGTGTCAAACTGCAAAACTTTCATCTAGTAAACTTTCTAAAACCATATC
GCAAAGACCATGAAGTTTATCATTGGGCGGCTGCTGAAGTCGCCAGGGCT
TGTCTCTTCCTAGCCTCCTCAATGATGGATAGTTTAATACCCTTGCCCTT
GGGAAGAGAAACCCATGGCTTTGTACCCTTGCCAATGGTGAACACATTTC
CAAGACGAGTTGCAAACTCATGACCAAGAGCATCCTGGATGTGGATAGTT
TCAAAGCTACCCTTATGCTTTTCTCTGTTCTTAATGATTCCAACACGTCC
TCTGTTTCTCCCTCCAGTCACCATCACAACATTTCCAACATCAAACTTGA
TGAACTCGGTGATCTTGTTAGTCTCCAGGTCCAGCTTGATGGTATCATTG
GCCTTGATGAGTGGGTCTGGGTAGCGAATAGTCCTCCCATCATAAGTGTT
GATGTAAGGGATTCCCTTCTGCCCAAATTGCACTGATCGAACCTTGCAGA
GCTTGAACTTAGCCTCCTCATCCCTGATTGAATGAAGGCGGAACCGGCCC
TTGGTGTCGTAAAGGAGACGGAAGTTCTCATTCGTCTTTGGAATTGACAC
AACATCCATGAACCCAGCAGGGTAAGTCTTATCTGTGCGAACC
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