CX675420
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15 Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = -2 Query: 304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789 R D YP G MDV+S+P NE+F ++ D KGR +L+ I+D KLCK+ + + G +N +DGR + + + K D + L + I ++F G + +TGG++ G I EK + + I ++ G +F T VF +G KP +S+ Sbjct: 78 RKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVGDFAKIIGIEKKQLYPDIITLETENGEQFKTIRDYVFIVG-DDKPVISM 244
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15 Identity = 56/170 (32.94%), Postives = 92/170 (54.12%), Query Frame = -2 Query: 301 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 792 VR D +P G MDVVSIP+T E++R+L + G+ LH I +EEA K ++R+ + + +N +DG + PL + ++ T+ + + +I E + F+ G V VT G+N R G I++ ++ G + + I+D G F T F +G+ KP +SLP Sbjct: 77 VRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14 Identity = 41/157 (26.11%), Postives = 78/157 (49.68%), Query Frame = -2 Query: 304 YPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 774 +P MD +S P N+++R+L G+ ++ I E K+CKV + I T D R ++ IK D++ + ++I +KF+VG++ ++T G++ G + +IK K K + IH++ G + + ++ IG+ +SL Sbjct: 82 FPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14 Identity = 51/163 (31.29%), Postives = 82/163 (50.31%), Query Frame = -2 Query: 304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789 R D +P G DV+++P NE +R+L D KGR LH + + KLC++ + + G +N DG I + D++ L + ++ + +KF+VGN+ MV GG++ G G I++ RE T+ I +F T V IG+ KP + L Sbjct: 72 RKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = -2 Query: 301 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 792 VR D +P G MDVVSIP+T E++R+L + G+ LH I ++EA K ++R+ + + +N +DG +I D + T+ + + +I E + F+ G V VT G+N R G I++ + G + + I+D G F T F +G KP +SLP Sbjct: 77 VRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = -2 Query: 304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789 R + +P G MDV+SIP+ NEN+ +L+D GR L + E+ KLCK+ + + G +N +DGR ++ + + K D++ + L + ++F+ G + +TGG++ G + EK + + +++ G +F T VF +G+ +P +S+ Sbjct: 78 RKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = -2 Query: 304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789 R + +P G MDV+SIP+ NEN+ +L+D GR L + E+ KLCK+ + + G +N +DGR ++ + + K D++ + L + ++F+ G + +TGG++ G + EK + + +++ G +F T VF +G+ +P +S+ Sbjct: 78 RKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 52/180 (28.89%), Postives = 93/180 (51.67%), Query Frame = -2 Query: 298 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDL------ETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFE-TIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 792 VR + +P G MDVV IP+T + +R++ + R + I +EEA+ K+C++++ + + G I +DG+ + DP + D++ L+L E+ K+ + I F+ G V GR+ G VG + + +G E I +++ G +F T G + IGK +P V++ K Sbjct: 80 VRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK-DEPLVTVRK 258
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13 Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2 Query: 328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792 VR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13 Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2 Query: 328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792 VR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231 The following BLAST results are available for this feature:
BLAST of CX675420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675420 ID=CX675420; Name=CX675420; organism=Citrus sinensis; type=EST; length=793bpback to top |