CX675420

Overview
NameCX675420
Unique NameCX675420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1465 contig Csv1_Contig1465:336..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.831e-15
Identity = 52/170 (30.59%), Postives = 84/170 (49.41%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R D  YP G MDV+S+P  NE+F ++ D KGR +L+ I+D     KLCK+ +    + G   +N +DGR          +  + + K  D + L +    I   ++F  G +  +TGG++ G    I   EK +   + I ++   G +F T    VF +G   KP +S+
Sbjct:   78 RKDHRYPTGLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVGDFAKIIGIEKKQLYPDIITLETENGEQFKTIRDYVFIVG-DDKPVISM 244          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.124e-15
Identity = 56/170 (32.94%), Postives = 92/170 (54.12%), Query Frame = -2
Query:  301 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 792
            VR D  +P G MDVVSIP+T E++R+L +  G+  LH I +EEA  K  ++R+ +  +     +N +DG    +  PL + ++     T+ + +   +I E + F+ G  V VT G+N  R G I++ ++   G  + + I+D  G  F T     F +G+  KP +SLP
Sbjct:   77 VRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEANIKPLRIRNKRMVKGAKIQLNFHDG--TNHLIPLSEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKKFPMGWPDVVTIEDEEGELFDTLKEYAFVVGR-DKPRISLP 243          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4_BIGNA (40S ribosomal protein S4 OS=Bigelowiella natans GN=RPS4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 41/157 (26.11%), Postives = 78/157 (49.68%), Query Frame = -2
Query:  304 YPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 774
            +P   MD +S P  N+++R+L    G+  ++ I   E   K+CKV  +         I T D R ++     IK  D++ +    ++I   +KF+VG++ ++T G++ G + +IK   K K   + IH++   G +   +  ++  IG+     +SL
Sbjct:   82 FPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTINDEIVYALKFEVGSLCLITRGKHLGTIAVIKEIRKTKSLRKMIHLEKIDGKKLTKKCSDLLVIGESKTSILSL 238          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METAC (30S ribosomal protein S4e OS=Methanosarcina acetivorans GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14
Identity = 51/163 (31.29%), Postives = 82/163 (50.31%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R D  +P G  DV+++P  NE +R+L D KGR  LH + +     KLC++ +    + G   +N  DG  I   +      D++ L +   ++ + +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   72 RKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLTLHKLNETNVN-KLCRINNKTTVKGGKFQLNLNDGTNIIGSNE-YGTKDSLILSIPDKQVVKHLKFEVGNLAMVVGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 55/169 (32.54%), Postives = 88/169 (52.07%), Query Frame = -2
Query:  301 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLP 792
            VR D  +P G MDVVSIP+T E++R+L +  G+  LH I ++EA  K  ++R+ +  +     +N +DG     +I   D     + T+ + +   +I E + F+ G  V VT G+N  R G I++ +    G  + + I+D  G  F T     F +G   KP +SLP
Sbjct:   77 VRKDYKFPVGIMDVVSIPETGEHYRVLPNRIGKLILHPISEDEAFIKPLRIRNKRMIKGARVQLNFHDGTNHIVSIAEKDNYF-TSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWPDVVTIEDEEGELFDTLKEYAFVVGT-DKPKISLP 243          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   78 RKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 46/170 (27.06%), Postives = 87/170 (51.18%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R +  +P G MDV+SIP+ NEN+ +L+D  GR  L   + E+   KLCK+ +    + G   +N +DGR         ++  + + K  D++ + L    +   ++F+ G +  +TGG++ G    +   EK     + + +++  G +F T    VF +G+  +P +S+
Sbjct:   78 RKEYKHPVGLMDVLSIPELNENYLVLFDENGRISLK--KTEKTGVKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVANALKAEEDIYKTGDSVLVSLPEQAVVGHVEFNEGKLAYITGGKHVGEFAKVVEVEKRTLYSDIVTLENKDGEKFKTIKPYVFIVGQ-DEPVISM 244          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 52/180 (28.89%), Postives = 93/180 (51.67%), Query Frame = -2
Query:  298 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDL------ETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFE-TIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 792
            VR +  +P G MDVV IP+T + +R++ +   R  +  I +EEA+ K+C++++  + + G   I  +DG+   +   DP      +    D++ L+L      E+ K+ + I F+ G  V    GR+ G VG +   +  +G  E  I +++  G +F T  G +  IGK  +P V++ K
Sbjct:   80 VRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVRGGNLQITMHDGKNWLVEIEDPTDPKEDVYSVGDSLVLELPEPDSGESWKVVDHIPFEEGVWVYAMTGRHSGEVGRVVEIQTFEGPQEDLITVENPEGDQFQTTKGRLIAIGK-DEPLVTVRK 258          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIY (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2
Query:  328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792
            VR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIN (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2
Query:  328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792
            VR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
The following BLAST results are available for this feature:
BLAST of CX675420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RS4E_META31.831e-1530.5930S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_PYRAB3.124e-1532.9430S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4_BIGNA5.892e-1426.1140S ribosomal protein S4 OS=Bigelowiella natans GN... [more]
RS4E_METAC7.695e-1431.2930S ribosomal protein S4e OS=Methanosarcina acetiv... [more]
RS4E_PYRFU1.005e-1332.5430S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_METVS1.005e-1327.0630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA1.005e-1327.0630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METKA1.005e-1328.8930S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_SULIY2.239e-1330.4330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIN2.239e-1330.4330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B04-D8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675420 ID=CX675420; Name=CX675420; organism=Citrus sinensis; type=EST; length=793bp
GGGCCAAAAATTCATTGCCAATAATATTGCCGCTGATAAAATAAAAGAGT
CACCTGTTTCATCACAAAACTAAAATTGAAACCAGTATTAAAACTCAAAA
CTTTATGATAACTAGTATCACCAACAAGAAAATCAAACAAGCAATCACAA
AAGTGTCAAACTGCAAAACTTTCATCTAGTAAACTTTCTAAAACCATATC
GCAAAGACCATGAAGTTTATCATTGGGCGGCTGCTGAAGTCGCCAGGGCT
TGTCTCTTCCTAGCCTCCTCAATGATGGATAGTTTAATACCCTTGCCCTT
GGGAAGAGAAACCCATGGCTTTGTACCCTTGCCAATGGTGAACACATTTC
CAAGACGAGTTGCAAACTCATGACCAAGAGCATCCTGGATGTGGATAGTT
TCAAAGCTACCCTTATGCTTTTCTCTGTTCTTAATGATTCCAACACGTCC
TCTGTTTCTCCCTCCAGTCACCATCACAACATTTCCAACATCAAACTTGA
TGAACTCGGTGATCTTGTTAGTCTCCAGGTCCAGCTTGATGGTATCATTG
GCCTTGATGAGTGGGTCTGGGTAGCGAATAGTCCTCCCATCATAAGTGTT
GATGTAAGGGATTCCCTTCTGCCCAAATTGCACTGATCGAACCTTGCAGA
GCTTGAACTTAGCCTCCTCATCCCTGATTGAATGAAGGCGGAACCGGCCC
TTGGTGTCGTAAAGGAGACGGAAGTTCTCATTCGTCTTTGGAATTGACAC
AACATCCATGAACCCAGCAGGGTAAGTCTTATCTGTGCGAACC
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