CX675420
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13 Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2 Query: 328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792 VR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13 Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2 Query: 328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792 VR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13 Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2 Query: 328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792 VR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13 Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2 Query: 328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792 VR D YP G MD+VSIP + FR++ D RL I +EA +K ++ + + G +N DGR I K+ T+K++L + I + G+ + GG+N G G++KN K + I ++ G+ + T L NV +IG+ Sbjct: 71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13 Identity = 51/163 (31.29%), Postives = 79/163 (48.47%), Query Frame = -2 Query: 304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789 R D +P G DV+++P NE +R+ D KGR LH + KLC++ + + G +N DG I + D++ L L +I + ++F VGN+ MV GG++ G +G I + RE T+ I +F T V IG+ KP + L Sbjct: 72 RKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKITEIREVKSSRHNTVAISGET--DFETIEDYVIVIGE-DKPEIRL 229
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13 Identity = 51/170 (30.00%), Postives = 83/170 (48.82%), Query Frame = -2 Query: 283 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIK 792 VR D Y G D +SIP N N+R++ G+F L + D A K+CK+ + + G +N +DG T+ + K D++ L + KI + + VG++VMVT G++ G +G +K + + S + +F T VF IGK + P +G+K Sbjct: 73 VRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDS------PAVQGVK 233
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13 Identity = 52/163 (31.90%), Postives = 76/163 (46.63%), Query Frame = -2 Query: 298 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 783 +K + GFMDV+ I E++R++Y+ +G L E A KL KVRS + T+DGRT D K D + + KI+E IK GN +T G + + G I E +G S +H Q+ F+T +VF IG +V P+ Sbjct: 75 EKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSPE 231
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = -2 Query: 328 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 789 R D + G MDV+SIP+ N+R++ D RL I E+K KL KV + + G + ++DGR +K D++ ++L + + + ++FD G+ V+VT GR GR+G + +G I ++D E + R N+ +GK Sbjct: 78 RYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13 Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = -2 Query: 304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789 R D +P G DV+++P NE +R+L D KGR L+ + + KLC++ + + G +N DG I + D++ L + + + +KF+VGN+ MV GG++ G G I++ RE T+ I +F T V IG+ KP + L Sbjct: 72 RKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12 Identity = 47/162 (29.01%), Postives = 76/162 (46.91%), Query Frame = -2 Query: 331 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKN---REKHKGSFETIHIQDALGHEFATRLGNVFTIG 792 VR D +P G MDV+SIP ++ FR++ D I E+AK+K ++ + + G +N DGR I P + + T+K+++ + I + + G ++ GGRN G G+IK + K + + I+ G T L NV IG Sbjct: 71 VRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIG 232 The following BLAST results are available for this feature:
BLAST of CX675420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 88
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675420 ID=CX675420; Name=CX675420; organism=Citrus sinensis; type=EST; length=793bpback to top |