CX675420

Overview
NameCX675420
Unique NameCX675420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIM (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2
Query:  328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792
            VR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIL (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2
Query:  328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792
            VR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIK (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2
Query:  328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792
            VR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULIA (30S ribosomal protein S4e OS=Sulfolobus islandicus (strain M.16.27) GN=rps4e PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = -2
Query:  328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND---TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792
            VR D  YP G MD+VSIP  +  FR++ D     RL  I  +EA +K  ++ +    + G   +N  DGR I       K+     T+K++L +  I +      G+  +  GG+N G  G++KN    K     +  I ++   G+ + T L NV +IG+
Sbjct:   71 VRKDYKYPVGLMDIVSIPSADLYFRVIPDNVRFMRLSKISADEAHYKYVRIMNKTTVKGGSIQLNLEDGRNILVDKETAKSFKTLMTLKIELPSQNIVDSFIISEGSYAIFVGGKNVGIHGVVKNINLSKFKSRKYSVITLESKDGNTYQTNLMNVMSIGR 231          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METBF (30S ribosomal protein S4e OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 51/163 (31.29%), Postives = 79/163 (48.47%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R D  +P G  DV+++P  NE +R+  D KGR  LH +       KLC++ +    + G   +N  DG  I   +      D++ L L   +I + ++F VGN+ MV GG++ G +G I + RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   72 RKDLRFPVGLFDVITLPLVNETYRMFQDEKGRLALHKLNATNVN-KLCRINNKTTLKGGKVQLNLNDGTNILGSNE-YSTKDSLILSLPDKQIVKHLQFKVGNLAMVVGGQHSGEIGKITEIREVKSSRHNTVAISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_UNCMA (30S ribosomal protein S4e OS=Uncultured methanogenic archaeon RC-I GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 51/170 (30.00%), Postives = 83/170 (48.82%), Query Frame = -2
Query:  283 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKGKGIK 792
            VR D  Y  G  D +SIP  N N+R++    G+F L  + D  A  K+CK+ +    + G   +N +DG T+   +   K  D++ L +   KI +   + VG++VMVT G++ G +G +K  +  + S     +      +F T    VF IGK +      P  +G+K
Sbjct:   73 VRKDYRYTVGMFDTISIPAINANYRVVIGMDGKFHLVPVTDASA--KICKIVNKTALRGGKIQLNLHDGTTMIASND-YKTKDSVILKMPERKIDQHFTYAVGSLVMVTEGKHSGEIGKVKEIKVVRSSAPNTVVITTPEGDFETIEQYVFVIGKDS------PAVQGVK 233          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_THEAC (30S ribosomal protein S4e OS=Thermoplasma acidophilum GN=rps4e PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 52/163 (31.90%), Postives = 76/163 (46.63%), Query Frame = -2
Query:  298 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKG-SFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSLPK 783
            +K +  GFMDV+ I    E++R++Y+ +G   L     E A  KL KVRS          + T+DGRT    D   K  D   + +   KI+E IK   GN   +T G +  + G I   E  +G S   +H Q+     F+T   +VF IG     +V  P+
Sbjct:   75 EKKFAVGFMDVIEI--NGESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANLVHFQEG----FSTIKDHVFMIGSSKFSFVLSPE 231          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_KORCO (30S ribosomal protein S4e OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 47/156 (30.13%), Postives = 79/156 (50.64%), Query Frame = -2
Query:  328 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATR--LGNVFTIGK 789
            R D  +  G MDV+SIP+   N+R++ D     RL  I   E+K KL KV   +  + G   + ++DGR        +K  D++ ++L +  + + ++FD G+ V+VT GR  GR+G +      +G    I ++D    E + R    N+  +GK
Sbjct:   78 RYDYKFQVGLMDVISIPEIGVNYRMVPDPHRFLRLIEIPQSESKMKLVKVIGKRTIRGGRIQLTSHDGRNFLLDGRDVKPGDSLLIELPSQSVIDHLRFDTGSSVLVTRGRMAGRIGRV------EGIGTIIEMRDLENPELSYRGVKENLIVVGK 227          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METMA (30S ribosomal protein S4e OS=Methanosarcina mazei GN=rps4e PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R D  +P G  DV+++P  NE +R+L D KGR  L+ + +     KLC++ +    + G   +N  DG  I   +      D++ L +    + + +KF+VGN+ MV GG++ G  G I++ RE       T+ I      +F T    V  IG+  KP + L
Sbjct:   72 RKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSND-YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREVKSSRHNTVMISGET--DFETIEDYVIVIGE-DKPEIRL 229          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULTO (30S ribosomal protein S4e OS=Sulfolobus tokodaii GN=rps4e PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 47/162 (29.01%), Postives = 76/162 (46.91%), Query Frame = -2
Query:  331 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAND-----TIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKN---REKHKGSFETIHIQDALGHEFATRLGNVFTIG 792
            VR D  +P G MDV+SIP ++  FR++ D         I  E+AK+K  ++ +    + G   +N  DGR I  P   +   +     T+K+++ +  I +  +   G   ++ GGRN G  G+IK     +  K  +  + I+   G    T L NV  IG
Sbjct:   71 VRKDYKFPVGLMDVISIPSSDLYFRIVPDNIKYLMPVKISKEDAKYKFVRIVNKTTNKNGNIQLNLEDGRNILIPKEKVPEMNYPTLTTLKIEIPSQNIIKSYELSEGKYAIIIGGRNVGLHGVIKTIQYAKYKKRKYSIVTIEQKNGESVQTNLQNVMVIG 232          
The following BLAST results are available for this feature:
BLAST of CX675420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RS4E_SULIM2.239e-1330.4330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIL2.239e-1330.4330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIK2.239e-1330.4330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_SULIA2.239e-1330.4330S ribosomal protein S4e OS=Sulfolobus islandicus... [more]
RS4E_METBF2.924e-1331.2930S ribosomal protein S4e OS=Methanosarcina barker... [more]
RS4E_UNCMA3.819e-1330.0030S ribosomal protein S4e OS=Uncultured methanogen... [more]
RS4E_THEAC3.819e-1331.9030S ribosomal protein S4e OS=Thermoplasma acidophi... [more]
RS4E_KORCO6.514e-1330.1330S ribosomal protein S4e OS=Korarchaeum cryptofil... [more]
RS4E_METMA8.508e-1330.6730S ribosomal protein S4e OS=Methanosarcina mazei ... [more]
RS4E_SULTO1.111e-1229.0130S ribosomal protein S4e OS=Sulfolobus tokodaii G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B04-D8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675420 ID=CX675420; Name=CX675420; organism=Citrus sinensis; type=EST; length=793bp
GGGCCAAAAATTCATTGCCAATAATATTGCCGCTGATAAAATAAAAGAGT
CACCTGTTTCATCACAAAACTAAAATTGAAACCAGTATTAAAACTCAAAA
CTTTATGATAACTAGTATCACCAACAAGAAAATCAAACAAGCAATCACAA
AAGTGTCAAACTGCAAAACTTTCATCTAGTAAACTTTCTAAAACCATATC
GCAAAGACCATGAAGTTTATCATTGGGCGGCTGCTGAAGTCGCCAGGGCT
TGTCTCTTCCTAGCCTCCTCAATGATGGATAGTTTAATACCCTTGCCCTT
GGGAAGAGAAACCCATGGCTTTGTACCCTTGCCAATGGTGAACACATTTC
CAAGACGAGTTGCAAACTCATGACCAAGAGCATCCTGGATGTGGATAGTT
TCAAAGCTACCCTTATGCTTTTCTCTGTTCTTAATGATTCCAACACGTCC
TCTGTTTCTCCCTCCAGTCACCATCACAACATTTCCAACATCAAACTTGA
TGAACTCGGTGATCTTGTTAGTCTCCAGGTCCAGCTTGATGGTATCATTG
GCCTTGATGAGTGGGTCTGGGTAGCGAATAGTCCTCCCATCATAAGTGTT
GATGTAAGGGATTCCCTTCTGCCCAAATTGCACTGATCGAACCTTGCAGA
GCTTGAACTTAGCCTCCTCATCCCTGATTGAATGAAGGCGGAACCGGCCC
TTGGTGTCGTAAAGGAGACGGAAGTTCTCATTCGTCTTTGGAATTGACAC
AACATCCATGAACCCAGCAGGGTAAGTCTTATCTGTGCGAACC
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