CX675420

Overview
NameCX675420
Unique NameCX675420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1465 contig Csv1_Contig1465:336..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULSO (30S ribosomal protein S4e OS=Sulfolobus solfataricus GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = -2
Query:  328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI---RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHK---GSFETIHIQDALGHEFATRLGNVFTIGK 792
            VR D  YP G MD+VSIP  +  FR+L D     R   I  +EA++K  ++ +    ++G   +N  DGR I   +      K   T+K++L + +I +       +  +  GGRN G  GI+KN    K     +  I ++   G+ + T + NV +IG+
Sbjct:   71 VRKDYKYPVGLMDIVSIPSADLYFRVLPDNVRFMRFSKISADEARYKYVRIINKTTIKEGRIQLNLEDGRNILVDKETAKNFKTLMTLKIELPSQQILDSFTISERSYAIFVGGRNVGIHGIVKNINLSKFKSRKYSVITLESRDGNTYQTNIMNVMSIGR 231          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 57/177 (32.20%), Postives = 89/177 (50.28%), Query Frame = -2
Query:  295 VRTDKTYPAGFMDVVSIPKTNENFRLL-YDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGTKPWVSLPKG 792
            VR D  +P G MDV+ I   +E +R++ Y  K    +  I  EEAK K+C++ +    + G   +N +DGR   IR  DP         K    + + +   +I +++ F+ G + +V  GRN GRVG I+   K  G  +T + ++D     F T    VF IGK  +P + LP+G
Sbjct:   78 VRKDYKFPVGAMDVIEIVGADEYYRMIPYPVKYLVPMR-IDAEEAKKKICRIENKVTVKGGHVQLNLHDGRNVLIRVEDPRNPVEAQEYKTLGGLLITVPEQEILDYVPFEEGVIAIVKSGRNVGRVGRIEEIVKGMGRKKTLVKMRDVHDEVFYTVAEYVFPIGK-EEPLIKLPEG 252          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 47/170 (27.65%), Postives = 85/170 (50.00%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++A  KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  VTGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   78 RKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKADAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.514e-12
Identity = 46/170 (27.06%), Postives = 84/170 (49.41%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  VTGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   78 RKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYVTGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.202e-12
Identity = 45/170 (26.47%), Postives = 84/170 (49.41%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R +  +PAG MDV+SIP+ +EN+ +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  +TGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   78 RKEYKHPAGLMDVLSIPEMDENYLVLFDESGRISLK--KTDKTDAKLCKIVNKTVIKGGHIQLNLHDGRNQIVKVSDATKAEEDVYKTGDSVLVSIPEQSIVGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_SULAC (30S ribosomal protein S4e OS=Sulfolobus acidocaldarius GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.228e-11
Identity = 49/166 (29.52%), Postives = 77/166 (46.39%), Query Frame = -2
Query:  328 VRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--------RYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRN---RGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK 792
            VR D  YP G MDVV IP  +   R++ D        +I  E+AK+K  ++ +    + G+  +N  DGR I        +Y  P +    T+K++L   KIT       G   M+ GGRN    G++  I+  +  +  +  + ++   G  F T L NV  IG+
Sbjct:   71 VRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLKSGVLQLNLEDGRNILLKGEELSQYNLPTL---TTLKIELPEQKITTAYTIKEGVYAMIIGGRNAGLHGKISKIQLAKYKRIKYSLVTLEGKDGSTFQTNLINVMAIGE 233          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.604e-11
Identity = 44/170 (25.88%), Postives = 83/170 (48.82%), Query Frame = -2
Query:  304 RTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGTKPWVSL 789
            R +  +PAG MDV+SIP+ +E + +L+D  GR  L   + ++   KLCK+ +    + G   +N +DGR          +  + + K  D++ + +    I   + F  G +  +TGG++ G    I   E      + + +++  G +F T    VF +G+  +P +S+
Sbjct:   78 RKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLK--KTDKTDVKLCKIVNKTVVKGGNIQLNLHDGRNQIVKVSDAAKAEEDVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFAKIVEVENRALYSDIVTLENKDGEKFKTVKPYVFIVGQ-DEPVISM 244          
BLAST of CX675420 vs. ExPASy Swiss-Prot
Match: RS4E_THEVO (30S ribosomal protein S4e OS=Thermoplasma volcanium GN=rps4e PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.574e-11
Identity = 46/152 (30.26%), Postives = 70/152 (46.05%), Query Frame = -2
Query:  331 DKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNRE-KHKGSFETIHIQDALGHEFATRLGNVFTIG 783
            ++ +  GFMDV+ I  + E++R++Y+ +G   L S   + A  K  +V++          +  +DGR +   D  I   D +   L   KITE IK   GN   +TGG + G  G I   E K   S   +H  +     F T   +VF IG
Sbjct:   75 ERKFGVGFMDVIEI--SGESYRVVYNNQGALVLVSESKDRANMKPLQVKNKVIAPGNKIQLGFHDGRVMVTEDRSISVGDVVIASLPDMKITEIIKMQPGNKAFITGGSHVGETGTISKIEIKESSSANLVHFDEG----FTTVKDHVFVIG 220          
The following BLAST results are available for this feature:
BLAST of CX675420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RS4E_SULSO1.111e-1230.4330S ribosomal protein S4e OS=Sulfolobus solfataric... [more]
RS4E_IGNH41.451e-1232.2030S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_METM51.895e-1227.6530S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM75.514e-1227.0630S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM67.202e-1226.4730S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_SULAC1.228e-1129.5230S ribosomal protein S4e OS=Sulfolobus acidocalda... [more]
RS4E_METMP1.604e-1125.8830S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_THEVO3.574e-1130.2630S ribosomal protein S4e OS=Thermoplasma volcaniu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62B04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B04-D8-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675420 ID=CX675420; Name=CX675420; organism=Citrus sinensis; type=EST; length=793bp
GGGCCAAAAATTCATTGCCAATAATATTGCCGCTGATAAAATAAAAGAGT
CACCTGTTTCATCACAAAACTAAAATTGAAACCAGTATTAAAACTCAAAA
CTTTATGATAACTAGTATCACCAACAAGAAAATCAAACAAGCAATCACAA
AAGTGTCAAACTGCAAAACTTTCATCTAGTAAACTTTCTAAAACCATATC
GCAAAGACCATGAAGTTTATCATTGGGCGGCTGCTGAAGTCGCCAGGGCT
TGTCTCTTCCTAGCCTCCTCAATGATGGATAGTTTAATACCCTTGCCCTT
GGGAAGAGAAACCCATGGCTTTGTACCCTTGCCAATGGTGAACACATTTC
CAAGACGAGTTGCAAACTCATGACCAAGAGCATCCTGGATGTGGATAGTT
TCAAAGCTACCCTTATGCTTTTCTCTGTTCTTAATGATTCCAACACGTCC
TCTGTTTCTCCCTCCAGTCACCATCACAACATTTCCAACATCAAACTTGA
TGAACTCGGTGATCTTGTTAGTCTCCAGGTCCAGCTTGATGGTATCATTG
GCCTTGATGAGTGGGTCTGGGTAGCGAATAGTCCTCCCATCATAAGTGTT
GATGTAAGGGATTCCCTTCTGCCCAAATTGCACTGATCGAACCTTGCAGA
GCTTGAACTTAGCCTCCTCATCCCTGATTGAATGAAGGCGGAACCGGCCC
TTGGTGTCGTAAAGGAGACGGAAGTTCTCATTCGTCTTTGGAATTGACAC
AACATCCATGAACCCAGCAGGGTAAGTCTTATCTGTGCGAACC
back to top