CX675418

Overview
NameCX675418
Unique NameCX675418
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5498 contig Csv1_Contig5498:1..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675418 vs. ExPASy Swiss-Prot
Match: TGCE1_SCHPO (Probable lipase C1672.09 OS=Schizosaccharomyces pombe GN=SPCC1672.09 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.592e-20
Identity = 41/92 (44.57%), Postives = 52/92 (56.52%), Query Frame = 3
Query:    6 EEHKVTTKDGYILSMQRIPV---GRSGGEPGNRLPVLL-QHGLLMDAVTWLL-LPPEQSLAFLLADNGYDVWLANTRGTKYSRGHVTLSPDD 266
            E+H V T+D YIL + RI     GR G     +LPV+   HGLLM++  W+  + P   L F L + GYDVWL N RG KYSR H+     D
Sbjct:   93 EDHLVRTEDDYILCIHRISKDSPGRIGSPHPKKLPVVYCHHGLLMNSEVWVCNVDPRNCLVFDLVNKGYDVWLGNNRGNKYSRQHLRFDSTD 184          

HSP 2 Score: 46.9802 bits (110), Expect = 1.592e-20
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 2
Query:  350 FWDWTWDELVAYDLPATLQHVHDQTGQ-KPHYVGHSLGTLIALASFSKDQLVN-KLRSAALLSP 535
            FWD++ D+   YD+P T+ ++   +GQ K  Y+G S GT  A AS S   L+N K+ S   L+P
Sbjct:  187 FWDFSIDDFAQYDIPDTIDYILKTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLIALAP 250          
BLAST of CX675418 vs. ExPASy Swiss-Prot
Match: TGCE2_SCHPO (Probable lipase C16A3.12c OS=Schizosaccharomyces pombe GN=SPBC16A3.12c PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.067e-18
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 3
Query:    6 EEHKVTTKDGYILSMQRIPVGRSGGEPGNRLPVLLQHGLLMDAVTWLLL-PPEQSLAFLLADNGYDVWLANTRGTKYSRGHVTLSPDD 266
            EEH V T+D +IL + RI   +       R  V   HGL+ ++  W+ +   E+SL F+L ++GYDVWL N RG KYSR H+T  P D
Sbjct:   87 EEHLVRTQDNFILCLHRITHPKQSQH--KREVVYCHHGLMTNSELWVAVNESERSLPFVLIESGYDVWLGNNRGNKYSRKHITYKPKD 172          

HSP 2 Score: 40.817 bits (94), Expect = 1.067e-18
Identity = 17/47 (36.17%), Postives = 33/47 (70.21%), Query Frame = 2
Query:  350 FWDWTWDELVAYDLPATLQHVHDQTG-QKPHYVGHSLGTLIALASFS 487
            FW+++ D++  +D+P T+ ++  +TG +K +Y+G S GT  A+A+ S
Sbjct:  175 FWNFSLDDMAMFDIPDTVDYILRETGREKLNYIGFSQGTAQAMAALS 221          
BLAST of CX675418 vs. ExPASy Swiss-Prot
Match: TGCE3_SCHPO (Probable lipase C14C8.15 OS=Schizosaccharomyces pombe GN=SPBC14C8.15 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.712e-18
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 3
Query:    6 EEHKVTTKDGYILSMQRIPVGRSGG-EPGNRLP-VLLQHGLLMDAVTWLL-LPPEQSLAFLLADNGYDVWLANTRGTKYSRGHVTLS 257
            EEH V T DGY+L + R+   + G  E  N LP VL  HGL+M++ +W+  L  E ++ F L + GYDVWL N RG KYS  ++  S
Sbjct:   87 EEHFVRTTDGYLLGLHRVYKKKKGKIEELNYLPPVLFIHGLMMNSESWVCNLKKEDAIPFALVEQGYDVWLGNLRGNKYSIKNIKFS 173          

HSP 2 Score: 41.2022 bits (95), Expect = 8.712e-18
Identity = 43/179 (24.02%), Postives = 75/179 (41.90%), Query Frame = 2
Query:  350 FWDWTWDELVAYDLPATLQHVHD-QTGQKPHYVGHSLGTLIALASFSKD-QLVNKLRS----AALLSPIAYVGQMTSPLAKN---------AADNFLAEALYWLGLDEFDPRGEAVVKLLKNICKKPGVDCTNLLNSFTGQNCCLKSSIVDVFLEHEPQATSTKNMIHVAQMIREGPLQ 841
            FWD++ D +  +D+P+ ++++    +      VG S G ++A A+ S D +L N +R+    A  ++P  Y G+    +              ++ L  A++W  +  + P    +V L                 S+TG+N      I  V   H    TS K  +H AQ+ R   LQ
Sbjct:  179 FWDFSLDSIAIFDIPSIVKYILSVNSFDSISLVGFSQGAILAFAALSIDTELRNSVRAFIALAPAIAPKKYSGRTVKSIIHANSQLLYLMFGRNSMLGSAVFWQAV-LYPPVFAKIVDLF-----------LRFFLSWTGKNISETQKI--VAYSHLYSFTSVKCFVHWAQITRRKVLQ 343          
BLAST of CX675418 vs. ExPASy Swiss-Prot
Match: TGL1_YEAST (Sterol esterase TGL1 OS=Saccharomyces cerevisiae GN=TGL1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.645e-15
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 3
Query:    6 EEHKVTTKDGYILSMQRIPVGRSGGEPGNRLPVLLQHGLLMDAVTWLL-LPPEQSLAFLLADNGYDVWLANTRGTKYSRGHVTLSP 260
            E+H V T+D YIL++ RIP         N   V L HGLLM +  W   +   ++L F+L D GYDVW+ N RG KYS  H+   P
Sbjct:   78 EDHLVRTEDNYILTLHRIPP--ISKNRFNNKVVYLHHGLLMCSDVWCCNIERHKNLPFVLHDLGYDVWMGNNRGNKYSTAHLNKPP 161          

HSP 2 Score: 35.8094 bits (81), Expect = 1.645e-15
Identity = 22/83 (26.51%), Postives = 43/83 (51.81%), Query Frame = 2
Query:  350 FWDWTWDELVAYDLPATLQHVHDQTG-QKPHYVGHSLGTLIALASFSKDQLVNK-----LRSAALLSPIAYVGQMTSPLAKNA 580
            FWD++ DE   +D+P +++ + D T   K   +G S G+    A+FS  + +N+     +  A  ++P     ++   LAK++
Sbjct:  166 FWDFSIDEFAFFDIPNSIEFILDITKVDKVICIGFSQGSAQMFAAFSLSEKLNRKVSHFIAIAPAMTPKGLHNRIVDTLAKSS 248          
The following BLAST results are available for this feature:
BLAST of CX675418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
TGCE1_SCHPO1.592e-2044.57Probable lipase C1672.09 OS=Schizosaccharomyces po... [more]
TGCE2_SCHPO1.067e-1843.18Probable lipase C16A3.12c OS=Schizosaccharomyces p... [more]
TGCE3_SCHPO8.712e-1844.83Probable lipase C14C8.15 OS=Schizosaccharomyces po... [more]
TGL1_YEAST1.645e-1543.02Sterol esterase TGL1 OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B03-D6-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675418 ID=CX675418; Name=CX675418; organism=Citrus sinensis; type=EST; length=843bp
TTTGTGAAGAACATAAGGTTACTACAAAAGATGGTTATATCCTCAGCATG
CAGAGAATTCCAGTGGGACGATCAGGCGGTGAACCGGGAAATAGGCTACC
GGTTTTGTTACAACATGGGCTCTTAATGGATGCAGTAACATGGCTGCTAT
TACCTCCAGAGCAATCATTGGCATTCTTGTTGGCTGATAATGGATATGAT
GTGTGGCTTGCCAACACGCGTGGAACCAAATATAGCCGTGGCCACGTGAC
ACTCAGTCCTGATGACTCAGTATGCTGCTTGGCTTGAACTGTGTCTTAAT
TTCCATCTTTGTGATTTCTATTTATACAAATTTTGACGTGTTTTAGGCTT
TCTGGGATTGGACGTGGGATGAATTAGTAGCCTACGATCTTCCTGCTACA
TTACAACATGTGCATGATCAAACGGGACAGAAACCACACTATGTTGGGCA
TTCACTGGGAACTCTGATTGCTCTCGCTTCATTTTCTAAGGATCAGCTGG
TGAACAAGTTAAGGTCAGCTGCCTTGCTTAGTCCAATTGCCTATGTTGGA
CAAATGACCTCACCACTTGCCAAAAATGCTGCCGATAACTTTCTAGCCGA
GGCATTATACTGGTTAGGCCTTGATGAATTTGATCCAAGAGGGGAGGCTG
TAGTCAAACTTCTTAAAAACATTTGCAAAAAACCTGGAGTTGATTGTACC
AACTTATTGAACTCTTTCACAGGCCAAAACTGCTGCCTAAAGTCTTCGAT
AGTAGATGTATTTCTAGAACACGAGCCTCAGGCAACTTCAACTAAGAACA
TGATCCACGTAGCTCAGATGATTAGAGAAGGACCATTGCAATG
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