CX675416

Overview
NameCX675416
Unique NameCX675416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:648..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 4.020e-65
Identity = 116/188 (61.70%), Postives = 147/188 (78.19%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYM 566
            +TL P+ +Q+      +       R  VHSFCK LT SDTSTHGGFSVLRRHA+ECLPPLDMS   PTQEL  KDLHG+EWRF+HI+RGQPRRHLL +GWS FV+SK+L++GDAF++LR E GE RVGVRR +++Q  +P+SVISS SMHLGVLA+A HA+ T ++F VYY+PR S S++IV  ++Y+
Sbjct:   92 ITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVRRLVQKQSTMPASVISSQSMHLGVLASASHAIKTNSIFLVYYRPRLSQSQYIVSVNKYL 279          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 3.763e-63
Identity = 122/188 (64.89%), Postives = 145/188 (77.13%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYM 566
            +TL PE +Q E     +       +  V SF K LTASDTSTHGGFSVLR+HA ECLP LDM++  PTQEL A+DLHG EWRF+HIFRGQPRRHLL +GWS FV+SKRLVAGDAF+FLRGE G+LRVGVRR  +QQ  +P+SVISS SM LGVLATA HAV+T T+F V+YKPR   S+FI+  ++YM
Sbjct:  116 ITLQPEEDQSE-PTSLDPPLVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRI--SQFIISVNKYM 300          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.086e-60
Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            FCKTLTASDTSTHGGFSV RR A++  PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  +N +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P  +Y+++
Sbjct:  134 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKA 293          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.086e-60
Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            FCKTLTASDTSTHGGFSV RR A++  PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  +N +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P  +Y+++
Sbjct:  134 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKA 293          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.480e-59
Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            FCKTLTASDTSTHGGFSV RR A++  PPLD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ IF+  +N +L +G+RRA RQQ  +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P  +Y+++
Sbjct:  132 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNDNNQLLLGIRRANRQQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKA 291          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 104/160 (65.00%), Postives = 133/160 (83.12%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            FCKTLTASDTSTHGGFSV RR A++  PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  ++ +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P  +Y+++
Sbjct:  134 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKA 293          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59
Identity = 104/160 (65.00%), Postives = 133/160 (83.12%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            FCKTLTASDTSTHGGFSV RR A++  PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  ++ +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P  +Y+++
Sbjct:  134 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKA 293          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58
Identity = 108/190 (56.84%), Postives = 141/190 (74.21%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL P + Q++             R   + FCKTLTASDTSTHGGFSV RR A++  PPLD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  +  +L +G+RRA R Q  +PSSV+SS SMHLG+LA A HA +T + FT++Y PR SPSEF++P  +Y+++
Sbjct:   99 MTLQPLNAQEQKDPYLPAELGVPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKA 288          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.119e-58
Identity = 105/190 (55.26%), Postives = 140/190 (73.68%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL P + Q++N            +   + FCKTLTASDTSTHGGFSV RR A+   PPLD ++QPP QEL A+D+H  EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  E  +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P  +Y+++
Sbjct:  105 MTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKA 294          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 8.119e-58
Identity = 105/190 (55.26%), Postives = 140/190 (73.68%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL P + Q++N            +   + FCKTLTASDTSTHGGFSV RR A+   PPLD ++QPP QEL A+D+H  EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+  E  +L +G+RRA R Q  +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P  +Y+++
Sbjct:  105 MTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKA 294          
The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ARFA_ORYSJ4.020e-6561.70Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]
ARFK_ARATH3.763e-6364.89Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFQ_ORYSJ5.086e-6065.63Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI5.086e-6065.63Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFY_ORYSJ1.480e-5965.63Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFF_ORYSJ3.296e-5965.00Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI3.296e-5965.00Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFF_ARATH2.137e-5856.84Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFL_ORYSJ8.119e-5855.26Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI8.119e-5855.26Auxin response factor 12 OS=Oryza sativa subsp. in... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B02-D4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bp
AAGTGACTTTACTTCCAGAGTCAAACCAAGATGAGAACGCGGTGGAGAAA
GAACCACCTCCACCCCCGCCACCAAGATTTCACGTGCATTCGTTTTGTAA
AACACTAACGGCATCGGATACAAGTACTCATGGTGGGTTTTCGGTACTGA
GACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGCAGCCT
CCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGGCGGTT
CCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAGTGGAT
GGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTTTTATA
TTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGAGCAAT
GAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAGCATGC
ATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAACTATG
TTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATTGTTCC
GTATGATCAGTACATGGAATCCAT
back to top