CX675416
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 4.020e-65 Identity = 116/188 (61.70%), Postives = 147/188 (78.19%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYM 566 +TL P+ +Q+ + R VHSFCK LT SDTSTHGGFSVLRRHA+ECLPPLDMS PTQEL KDLHG+EWRF+HI+RGQPRRHLL +GWS FV+SK+L++GDAF++LR E GE RVGVRR +++Q +P+SVISS SMHLGVLA+A HA+ T ++F VYY+PR S S++IV ++Y+ Sbjct: 92 ITLQPDPDQENLPTLPDPPLPEQPRPVVHSFCKILTPSDTSTHGGFSVLRRHANECLPPLDMSMATPTQELITKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLISGDAFVYLRSETGEQRVGVRRLVQKQSTMPASVISSQSMHLGVLASASHAIKTNSIFLVYYRPRLSQSQYIVSVNKYL 279
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3) HSP 1 Score: 240.736 bits (613), Expect = 3.763e-63 Identity = 122/188 (64.89%), Postives = 145/188 (77.13%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYM 566 +TL PE +Q E + + V SF K LTASDTSTHGGFSVLR+HA ECLP LDM++ PTQEL A+DLHG EWRF+HIFRGQPRRHLL +GWS FV+SKRLVAGDAF+FLRGE G+LRVGVRR +QQ +P+SVISS SM LGVLATA HAV+T T+F V+YKPR S+FI+ ++YM Sbjct: 116 ITLQPEEDQSE-PTSLDPPLVEPAKPTVDSFVKILTASDTSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLRVGVRRLAKQQSTMPASVISSQSMRLGVLATASHAVTTTTIFVVFYKPRI--SQFIISVNKYM 300
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 5.086e-60 Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 3 Query: 93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ +N +L +G+RRA R Q +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P +Y+++ Sbjct: 134 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKA 293
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 5.086e-60 Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 3 Query: 93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ +N +L +G+RRA R Q +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P +Y+++ Sbjct: 134 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDNNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKA 293
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 1.480e-59 Identity = 105/160 (65.62%), Postives = 133/160 (83.12%), Query Frame = 3 Query: 93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ IF+ +N +L +G+RRA RQQ +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P +Y+++ Sbjct: 132 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNDNNQLLLGIRRANRQQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKA 291
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59 Identity = 104/160 (65.00%), Postives = 133/160 (83.12%), Query Frame = 3 Query: 93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ ++ +L +G+RRA R Q +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P +Y+++ Sbjct: 134 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKA 293
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 3.296e-59 Identity = 104/160 (65.00%), Postives = 133/160 (83.12%), Query Frame = 3 Query: 93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 FCKTLTASDTSTHGGFSV RR A++ PPLD ++QPP QEL AKDLHGNEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ ++ +L +G+RRA R Q +PSSV+SS SMH+G+LA A HA ST + FT++Y PR SPSEF++P +Y+++ Sbjct: 134 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDSNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKA 293
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2) HSP 1 Score: 224.942 bits (572), Expect = 2.137e-58 Identity = 108/190 (56.84%), Postives = 141/190 (74.21%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 +TL P + Q++ R + FCKTLTASDTSTHGGFSV RR A++ PPLD S+QPP QEL A+DLH NEW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ + +L +G+RRA R Q +PSSV+SS SMHLG+LA A HA +T + FT++Y PR SPSEF++P +Y+++ Sbjct: 99 MTLQPLNAQEQKDPYLPAELGVPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKA 288
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 8.119e-58 Identity = 105/190 (55.26%), Postives = 140/190 (73.68%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 +TL P + Q++N + + FCKTLTASDTSTHGGFSV RR A+ PPLD ++QPP QEL A+D+H EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ E +L +G+RRA R Q +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P +Y+++ Sbjct: 105 MTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKA 294
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 8.119e-58 Identity = 105/190 (55.26%), Postives = 140/190 (73.68%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 +TL P + Q++N + + FCKTLTASDTSTHGGFSV RR A+ PPLD ++QPP QEL A+D+H EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ +F+ E +L +G+RRA R Q +PSSV+SS SMH+G+LA A HA +T + FT++Y PR SPSEF++P +Y+++ Sbjct: 105 MTLQPLNPQEQNDAYLPAEMGIMSKQPTNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLSKYIKA 294 The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bpback to top |