CX675416

Overview
NameCX675416
Unique NameCX675416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:648..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 221.476 bits (563), Expect = 2.362e-57
Identity = 104/190 (54.74%), Postives = 137/190 (72.11%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL P ++  + A++         R     FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP QEL A+DLH N W FRHI+RGQP+RHLL +GWS+FVS KRL AGD+ IF+R E  +L +G+RRA RQ  N+ SSV+SS SMH+G+LA A HA +  + FT++Y PR SP+EF++P+ +Y ++
Sbjct:  124 MTLQPVTSYGKEALQLSELALKQARPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFVRDEKQQLLLGIRRANRQPTNISSSVLSSDSMHIGILAAAAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKA 313          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 2.612e-56
Identity = 103/190 (54.21%), Postives = 136/190 (71.58%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL P +   + A++         R  +  FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP QEL A+D+H N W FRHI+RGQP+RHLL +GWS+FVS KRL AGD+ I +R E  +L +G+RRA RQ  N+ SSV+SS SMH+GVLA A HA +  + FT++Y PR SP+EF++P+ +Y ++
Sbjct:  118 MTLQPVNTYGKEALQISELALKQARPQMEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIVVRDEKHQLLLGIRRANRQPTNISSSVLSSDSMHIGVLAAAAHAAANSSPFTIFYNPRASPTEFVIPFAKYQKA 307          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.455e-56
Identity = 103/187 (55.08%), Postives = 134/187 (71.66%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQY 563
            +TL P +  D +A+          +     FCKTLTASDTSTHGGFSV RR A++  PPLD + QPP QEL AKDLH   W+FRHI+RGQP+RHLL +GWSVFVS+KRL+AGD+ +F+R E  +L +G+RRA R Q  + SSV+SS SMH+G+LA A HA +  + FT++Y PR SPSEF++P  +Y
Sbjct:   97 MTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKY 283          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.455e-56
Identity = 103/187 (55.08%), Postives = 134/187 (71.66%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQY 563
            +TL P +  D +A+          +     FCKTLTASDTSTHGGFSV RR A++  PPLD + QPP QEL AKDLH   W+FRHI+RGQP+RHLL +GWSVFVS+KRL+AGD+ +F+R E  +L +G+RRA R Q  + SSV+SS SMH+G+LA A HA +  + FT++Y PR SPSEF++P  +Y
Sbjct:   97 MTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKY 283          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 7.599e-56
Identity = 105/187 (56.15%), Postives = 131/187 (70.05%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQY 563
            +TL P +  D  A+          R     FCKTLTASDTSTHGGFSV RR A++  PPLD S QPP QE+ AKDLH   W FRHI+RGQP+RHLL +GWSVFVS+KRL AGD+ +F+R E  +L +G+RRA RQ   + SSVISS SMH+G+LA A HA +  + FT+++ PR SPSEF+VP  +Y
Sbjct:   96 MTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFVRDEKSQLMLGIRRANRQTPTLSSSVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKY 282          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 9.925e-56
Identity = 101/162 (62.35%), Postives = 126/162 (77.78%), Query Frame = 3
Query:   87 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            H FCKTLTASDTSTHGGFSV RR A++C PPLD S+Q P+QEL AKDLH  EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++GELR+GVRRA + +       + +   +LG LA   HAV+T ++F +YY PR S SEFIVPY ++M+S
Sbjct:  140 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHSTEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGELRLGVRRAAQLKNGSAFPALYNQCSNLGTLANVAHAVATESVFNIYYNPRLSQSEFIVPYWKFMKS 301          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 2.888e-55
Identity = 100/160 (62.50%), Postives = 124/160 (77.50%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            FCKTLTASDTSTHGGFSV RR A++  PPLD S QPPTQEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV SKRL AGD+ +F+R E  +L VGVRRA RQQ  +PSSV+S+ SMH+GVLA A HA +  T F ++Y PR  P+EF++P  +Y ++
Sbjct:  158 FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRANRQQTALPSSVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKA 317          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 4.926e-55
Identity = 101/160 (63.12%), Postives = 127/160 (79.38%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            FCKTLTASDTSTHGGFSV RR A++  PPLD + QPP QEL A+DLH  EW+FRHIFRGQP+RHLL +GWSVFVS+KRLVAGD+ IF+R E  +L +G+R A R Q  VPSSV+SS SMH+G+LA A HA +T + FTV++ PR S SEF++   +Y+++
Sbjct:  126 FCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQLFLGIRHATRPQTIVPSSVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKA 285          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 6.433e-55
Identity = 105/189 (55.56%), Postives = 137/189 (72.49%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYME 569
            +TL+P++ Q     + +       R  V+SF K LTASDTS HGGFSV ++HA ECLPPLDMS+  PTQE+ A DLHGN+WRFRHI+RG  +RHLL  GW+ F +SK+LV GD  +F+RGE GELRVG+RRA  QQGN+PSS++S  SM  G++A+A HA     MF V YKPR+  S+FIV YD++++
Sbjct:  100 ITLMPDTTQVVIPTQNQNQF----RPLVNSFTKVLTASDTSVHGGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIVSIESMRHGIIASAKHAFDNQCMFIVVYKPRS--SQFIVSYDKFLD 282          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 6.433e-55
Identity = 105/190 (55.26%), Postives = 134/190 (70.53%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL P +  D +A+          R     FCKTLTASDTSTHGGFSV RR A++  P LD S QPP QEL AKD+H N W FRHI+RGQP+RHLL +GWSVFVS+KRL AGD+ +F+R    +L +G+RRA RQQ  + SSVISS SMH+GVLA A HA +  + FT++Y PR +P+EF+VP  +Y ++
Sbjct:   97 MTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKAQLLLGIRRANRQQPALSSSVISSDSMHIGVLAAAAHANANNSPFTIFYNPRAAPAEFVVPLAKYTKA 286          
The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ARFS_ORYSJ2.362e-5754.74Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFE_ORYSJ2.612e-5654.21Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFP_ORYSJ4.455e-5655.08Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI4.455e-5655.08Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFS_ARATH7.599e-5656.15Auxin response factor 19 OS=Arabidopsis thaliana G... [more]
ARFO_ORYSJ9.925e-5662.35Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFE_ARATH2.888e-5562.50Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFH_ARATH4.926e-5563.13Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFN_ARATH6.433e-5555.56Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFG_ARATH6.433e-5555.26Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_62B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B02-D4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bp
AAGTGACTTTACTTCCAGAGTCAAACCAAGATGAGAACGCGGTGGAGAAA
GAACCACCTCCACCCCCGCCACCAAGATTTCACGTGCATTCGTTTTGTAA
AACACTAACGGCATCGGATACAAGTACTCATGGTGGGTTTTCGGTACTGA
GACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGCAGCCT
CCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGGCGGTT
CCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAGTGGAT
GGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTTTTATA
TTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGAGCAAT
GAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAGCATGC
ATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAACTATG
TTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATTGTTCC
GTATGATCAGTACATGGAATCCAT
back to top