CX675416

Overview
NameCX675416
Unique NameCX675416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:648..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.433e-54
Identity = 104/193 (53.89%), Postives = 133/193 (68.91%), Query Frame = 3
Query:    3 VTLLPESNQ---DENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL P SN    D+  +          R     FCKTLTASDTSTHGGFSV RR A+   P LD S QPP QEL A+DLH N W FRHI+RGQP+RHLL +GWS+FVS KRL+AGD+ +F+R    +L +G+RRA RQ  N+ SSV+SS SMH+G+LA A HA +  + FT+YY PR S SEF++P+ +Y ++
Sbjct:   99 MTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDAKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSQFTIYYNPRASTSEFVIPFAKYQKA 291          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 1.872e-54
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQY 563
            FCK LTASDTSTHGGFSV RR A++  P LD S QPP QEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV +KRL AGD+ +F+R E  +L +GVRRA RQQ  + SSV+S+ SMH+GVLA A HA S+G+ FT+YY PRTSPS F++P  +Y
Sbjct:  143 FCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLLGVRRATRQQTMLSSSVLSTDSMHIGVLAAAAHAASSGSSFTIYYNPRTSPSPFVIPVARY 299          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 1.872e-54
Identity = 99/157 (63.06%), Postives = 122/157 (77.71%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQY 563
            FCK LTASDTSTHGGFSV RR A++  P LD S QPP QEL  +DLH N W FRHI+RGQP+RHLL +GWS+FV +KRL AGD+ +F+R E  +L +GVRRA RQQ  + SSV+S+ SMH+GVLA A HA S+G+ FT+YY PRTSPS F++P  +Y
Sbjct:  143 FCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLLGVRRATRQQTMLSSSVLSTDSMHIGVLAAAAHAASSGSSFTIYYNPRTSPSPFVIPVARY 299          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 4.170e-54
Identity = 98/162 (60.49%), Postives = 126/162 (77.78%), Query Frame = 3
Query:   87 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            H FCKTLTASDTSTHGGFSV RR A++C  PLD  +Q P+QEL AKDLHG EW+FRHI+RGQPRRHLL +GWS+FVS K LV+GDA +FLR E GELR+G+RRA R +  +P S+I  +S    +L+   +AVST +MF V+Y PR + +EF++PY++Y+ S
Sbjct:  175 HMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELRLGIRRAARPRNGLPDSIIEKNSCS-NILSLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITS 335          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 5.446e-54
Identity = 105/190 (55.26%), Postives = 136/190 (71.58%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL+P++ Q     + E       R  V+SF K LTASDTS HGGF V ++HA ECLP LDMS+  P QEL A DLHGN+WRF H +RG P+RHLL +GW+ F +SK+LVAGD  +F+RGE GELRVG+RRA  QQGN+PSS++S   M  GV+A+A HA     MFTV YKPR+  S+FIV YD+++++
Sbjct:  100 ITLMPDTTQVVIPTQNENQF----RPLVNSFTKVLTASDTSAHGGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVVASAKHAFDNQCMFTVVYKPRS--SKFIVSYDKFLDA 283          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 2.070e-53
Identity = 107/190 (56.32%), Postives = 137/190 (72.11%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL+P++ Q     + E       R  V+SF K LTASDTS  GGF V ++HA ECLPPLDMS+  PTQEL A DLHGN+WRF H +RG P+RHLL +GW+ F +SK+LVAGD  +F+RGE GELRVG+RRA  QQGN+PSS+IS  SM  GV+A+A HA     MF V YKPR+  S+FIV YD+++++
Sbjct:  100 ITLMPDTTQVVIPTQNENQF----RPLVNSFTKVLTASDTS--GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELRVGIRRAGHQQGNIPSSIISIESMRHGVIASAKHAFDNQCMFIVVYKPRS--SQFIVSYDKFLDA 281          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.703e-53
Identity = 98/162 (60.49%), Postives = 122/162 (75.31%), Query Frame = 3
Query:   87 HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            H FCKTLTASDTSTHGGFSV RR A++C PPLD S Q P QEL AKDLHG EWRFRHI+RGQPRRHLL +GWS F++ K+LV+GDA +FLRGE+GELR+GVRRA + +   P   + +   +   L+   HAV+  ++F +YY PR S SEFI+PY ++M S
Sbjct:  145 HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHAVAVKSIFHIYYNPRLSQSEFIIPYWKFMRS 306          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 2.288e-52
Identity = 101/190 (53.16%), Postives = 136/190 (71.58%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL+P++ Q     + E       R  V+SF K LTASDTS +GGFSV ++HA ECLPPLDMS+  P QE+ A DLH N+WRFRH +RG P+RH L +GW+ F++SK+LV GD  +F+RGE GELRVG+RRA  QQGN+PSS++S   M  GV+A+A HA     +F V YKPR+  S+FIV YD+++++
Sbjct:  100 ITLMPDTTQVVIPTQSENRF----RPLVNSFTKVLTASDTSAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCIFIVVYKPRS--SQFIVSYDKFLDA 283          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 8.695e-52
Identity = 102/190 (53.68%), Postives = 134/190 (70.53%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL+P++ Q     + E       R  V+SF K LTASD S +G FSV ++HA ECLPPLDMS+  P QEL A DLHGN+W FRH +RG P+RHLL +GW+ F +SK+LV GD  +F+RGE GELRVG+RRA  QQGN+PSS++S   M  GV+A+A HA     MF V YKPR+  S+FIV YD+++++
Sbjct:  100 ITLMPDTTQVVIPTQNENQF----RPLVNSFTKVLTASDISANGVFSVPKKHAIECLPPLDMSQPLPAQELLAIDLHGNQWSFRHSYRGTPQRHLLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHAFDNQCMFIVVYKPRS--SQFIVSYDKFLDA 283          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 5.636e-51
Identity = 99/190 (52.11%), Postives = 132/190 (69.47%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +TL+P++ Q     + E       R  V+SF K LTASDTS +GGF V ++HA ECLPPL +    P QEL AKDLHGN+WRFRH +RG P+RH L +GW+ F +SK+LV GD  +F+RGE GELRVG+RRA  QQGN+PSS++S   M  GV+A+A HA+    +F V YKP    S+FIV YD+++++
Sbjct:  100 ITLMPDTTQVVIPTQSENQF----RPLVNSFTKVLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGELRVGIRRARHQQGNIPSSIVSIDCMRHGVIASAKHALDNQCIFIVVYKPSIRSSQFIVSYDKFLDA 281          
The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ARFU_ORYSJ1.433e-5453.89Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSJ1.872e-5463.06Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI1.872e-5463.06Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFD_ARATH4.170e-5460.49Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFL_ARATH5.446e-5455.26Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFV_ARATH2.070e-5356.32Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFB_ORYSJ2.703e-5360.49Auxin response factor 2 OS=Oryza sativa subsp. jap... [more]
ARFU_ARATH2.288e-5253.16Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFO_ARATH8.695e-5253.68Putative auxin response factor 15 OS=Arabidopsis t... [more]
ARFT_ARATH5.636e-5152.11Auxin response factor 20 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B02-D4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bp
AAGTGACTTTACTTCCAGAGTCAAACCAAGATGAGAACGCGGTGGAGAAA
GAACCACCTCCACCCCCGCCACCAAGATTTCACGTGCATTCGTTTTGTAA
AACACTAACGGCATCGGATACAAGTACTCATGGTGGGTTTTCGGTACTGA
GACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGCAGCCT
CCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGGCGGTT
CCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAGTGGAT
GGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTTTTATA
TTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGAGCAAT
GAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAGCATGC
ATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAACTATG
TTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATTGTTCC
GTATGATCAGTACATGGAATCCAT
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