CX675416

Overview
NameCX675416
Unique NameCX675416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:648..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 9.613e-51
Identity = 101/198 (51.01%), Postives = 136/198 (68.69%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEK--------EXXXXXXXRFHV-HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYME 569
            V+LLPES   E  V +        E       R +  H FCKTLTASDTSTHGGFSV RR A++C PPLD S+  P+QEL A+DLHG EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA + +G    S   + +M+    +   HA+ST ++F++ Y P+ S S FI+P  ++++
Sbjct:  120 VSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKASWSNFIIPAPKFLK 317          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 8.138e-50
Identity = 91/163 (55.83%), Postives = 122/163 (74.85%), Query Frame = 3
Query:   84 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            +H FCKTLTASDTSTHGGFSV RR A++C PPLD  +  P+QEL AKDLHG +WRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++GELR+GVRRA + +        SS S  +  L+    ++  G++F + Y PR + SE++VPY ++++S
Sbjct:  188 LHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFLRGDDGELRLGVRRATQLKNEAIFKAFSSESSKMRTLSAVADSLKHGSVFHICYNPRATASEYVVPYWKFVKS 350          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFN_ORYSJ (Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 4.937e-47
Identity = 91/185 (49.19%), Postives = 125/185 (67.57%), Query Frame = 3
Query:   18 ESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            E   ++ A E E           H FCKTLTASDTSTHGGFSV RR A++C PPLD     P+QEL A DLHG +W+FRHI+RGQPRRHLL  GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA++ +       ++S    L +L++   ++   ++F + + PR+  SEFIVPY + ++S
Sbjct:  108 EGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPYWRLLKS 292          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 1.876e-46
Identity = 89/165 (53.94%), Postives = 120/165 (72.73%), Query Frame = 3
Query:   84 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSG--WSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572
            V+ F K LTASD S  GG  + +++A EC PPLDMS+   TQ L AKDL+G EW F+H+FRG P+RH+  SG  WSVF ++KRL+ GD F+ LRGENGELR G+RRA  QQG++PSSVIS++ M  GV+A+  +A  T  MF V YKP  S S+F++ YD+++++
Sbjct:  121 VYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKP--SSSQFVISYDKFVDA 283          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.040e-33
Identity = 76/189 (40.21%), Postives = 101/189 (53.44%), Query Frame = 3
Query:   90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA------------------------------------MRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548
            SF KTLT SD +  GGFSV R  A+   P LD S +PP Q + AKD+HG  W+FRHI+RG PRRHLL +GWS FV+ K+L+AGD+ +FLR E+G+L VG+RRA                                    M++ GN   +  ++  + +  +A A    + G  F V Y PR S  EF V
Sbjct:  114 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRGGLGSNAGSDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRASTPEFCV 302          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.486e-32
Identity = 79/207 (38.16%), Postives = 107/207 (51.69%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR---------QQGNVP----------------SSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548
            + L+P    ++  VE++            SF KTLT SD +  GGFSV R  A+   P LD +  PP Q + AKD+HG  W FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLRG+ G+L VG+RRA R         ++ ++P                ++      +    L  A    + G  F V Y PR S  EF V
Sbjct:   90 IRLVPLRAAEDGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRGDGGDLHVGIRRAKRGFCGGGGGAEEASLPGWDQYGGLMRGNASPCAAAKGRGKVRAEDLVEAARLANGGQPFEVVYYPRASTPEFCV 296          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.859e-32
Identity = 84/187 (44.92%), Postives = 107/187 (57.22%), Query Frame = 3
Query:   90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ-GNVP---------------SSVI---SSHSMHL---------------GVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548
            SF KTLT SD +  GGFSV R  A+   P LD + +PP Q + AKD+HG+ W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA R   GN P               SS++    S+S+                  V+  A  A+S G  F V Y PR S SEF V
Sbjct:  119 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYSAGWNPIGGSCGYSSLLREDESNSLRRSNCSLADRKGKVTAESVIEAATLAIS-GRPFEVVYYPRASTSEFCV 304          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 6.478e-31
Identity = 77/182 (42.31%), Postives = 97/182 (53.30%), Query Frame = 3
Query:   90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPS-----SVISSHSMHLGVL------------------------ATAWHAVSTGTMFTVYYKPRTSPSEFIV 548
            SF KTLT SD +  GGFSV R  A+   P LD S +PP Q + AKD+HG EW FRHI+RG PRRHLL +GWS FV+ K+L AGD+ +F+R E G + VG+RRA R   ++       S I     + G++                         TA    +TG  F V Y PR S  EF V
Sbjct:  124 SFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCV 305          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 6.478e-31
Identity = 77/182 (42.31%), Postives = 97/182 (53.30%), Query Frame = 3
Query:   90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPS-----SVISSHSMHLGVL------------------------ATAWHAVSTGTMFTVYYKPRTSPSEFIV 548
            SF KTLT SD +  GGFSV R  A+   P LD S +PP Q + AKD+HG EW FRHI+RG PRRHLL +GWS FV+ K+L AGD+ +F+R E G + VG+RRA R   ++       S I     + G++                         TA    +TG  F V Y PR S  EF V
Sbjct:  124 SFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCV 305          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.443e-30
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 3
Query:   90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 404
            SF KTLT SD +  GGFSV R  A+   P LD S  PP Q + AKD+HG  W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA +
Sbjct:  127 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKK 231          
The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ARFC_ARATH9.613e-5151.01Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]
ARFC_ORYSJ8.138e-5055.83Auxin response factor 3 OS=Oryza sativa subsp. jap... [more]
ARFN_ORYSJ4.937e-4749.19Auxin response factor 14 OS=Oryza sativa subsp. ja... [more]
ARFM_ARATH1.876e-4653.94Auxin response factor 13 OS=Arabidopsis thaliana G... [more]
ARFJ_ARATH9.040e-3340.21Auxin response factor 10 OS=Arabidopsis thaliana G... [more]
ARFH_ORYSJ4.486e-3238.16Auxin response factor 8 OS=Oryza sativa subsp. jap... [more]
ARFP_ARATH5.859e-3244.92Auxin response factor 16 OS=Arabidopsis thaliana G... [more]
ARFJ_ORYSJ6.478e-3142.31Auxin response factor 10 OS=Oryza sativa subsp. ja... [more]
ARFJ_ORYSI6.478e-3142.31Auxin responsive factor 10 OS=Oryza sativa subsp. ... [more]
ARFR_ORYSJ1.443e-3059.05Auxin response factor 18 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B02-D4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bp
AAGTGACTTTACTTCCAGAGTCAAACCAAGATGAGAACGCGGTGGAGAAA
GAACCACCTCCACCCCCGCCACCAAGATTTCACGTGCATTCGTTTTGTAA
AACACTAACGGCATCGGATACAAGTACTCATGGTGGGTTTTCGGTACTGA
GACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGCAGCCT
CCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGGCGGTT
CCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAGTGGAT
GGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTTTTATA
TTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGAGCAAT
GAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAGCATGC
ATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAACTATG
TTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATTGTTCC
GTATGATCAGTACATGGAATCCAT
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