CX675416
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2) HSP 1 Score: 199.519 bits (506), Expect = 9.613e-51 Identity = 101/198 (51.01%), Postives = 136/198 (68.69%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEK--------EXXXXXXXRFHV-HSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYME 569 V+LLPES E V + E R + H FCKTLTASDTSTHGGFSV RR A++C PPLD S+ P+QEL A+DLHG EWRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA + +G S + +M+ + HA+ST ++F++ Y P+ S S FI+P ++++ Sbjct: 120 VSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLRLGVRRASQIEGTAALSAQYNQNMNHNNFSEVAHAISTHSVFSISYNPKASWSNFIIPAPKFLK 317
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 8.138e-50 Identity = 91/163 (55.83%), Postives = 122/163 (74.85%), Query Frame = 3 Query: 84 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 +H FCKTLTASDTSTHGGFSV RR A++C PPLD + P+QEL AKDLHG +WRFRHI+RGQPRRHLL +GWS FV+ K+LV+GDA +FLRG++GELR+GVRRA + + SS S + L+ ++ G++F + Y PR + SE++VPY ++++S Sbjct: 188 LHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFLRGDDGELRLGVRRATQLKNEAIFKAFSSESSKMRTLSAVADSLKHGSVFHICYNPRATASEYVVPYWKFVKS 350
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFN_ORYSJ (Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2) HSP 1 Score: 187.193 bits (474), Expect = 4.937e-47 Identity = 91/185 (49.19%), Postives = 125/185 (67.57%), Query Frame = 3 Query: 18 ESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 E ++ A E E H FCKTLTASDTSTHGGFSV RR A++C PPLD P+QEL A DLHG +W+FRHI+RGQPRRHLL GWS FV+ K+LV+GDA +FLRG++G+LR+GVRRA++ + ++S L +L++ ++ ++F + + PR+ SEFIVPY + ++S Sbjct: 108 EGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYRGQPRRHLLTIGWSSFVNRKKLVSGDAVLFLRGDDGQLRLGVRRAVQLRNEALFEPVNSSDSKLRILSSVASSLENKSVFHICFNPRSGASEFIVPYWRLLKS 292
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3) HSP 1 Score: 185.267 bits (469), Expect = 1.876e-46 Identity = 89/165 (53.94%), Postives = 120/165 (72.73%), Query Frame = 3 Query: 84 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSG--WSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYMES 572 V+ F K LTASD S GG + +++A EC PPLDMS+ TQ L AKDL+G EW F+H+FRG P+RH+ SG WSVF ++KRL+ GD F+ LRGENGELR G+RRA QQG++PSSVIS++ M GV+A+ +A T MF V YKP S S+F++ YD+++++ Sbjct: 121 VYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGELRFGIRRAKHQQGHIPSSVISANCMQHGVIASVVNAFKTKCMFNVVYKP--SSSQFVISYDKFVDA 283
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 9.040e-33 Identity = 76/189 (40.21%), Postives = 101/189 (53.44%), Query Frame = 3 Query: 90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRA------------------------------------MRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548 SF KTLT SD + GGFSV R A+ P LD S +PP Q + AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+L+AGD+ +FLR E+G+L VG+RRA M++ GN + ++ + + +A A + G F V Y PR S EF V Sbjct: 114 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKRGGLGSNAGSDNPYPGFSGFLRDDESTTTTSKLMMMKRNGNNDGNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRASTPEFCV 302
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 4.486e-32 Identity = 79/207 (38.16%), Postives = 107/207 (51.69%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR---------QQGNVP----------------SSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548 + L+P ++ VE++ SF KTLT SD + GGFSV R A+ P LD + PP Q + AKD+HG W FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLRG+ G+L VG+RRA R ++ ++P ++ + L A + G F V Y PR S EF V Sbjct: 90 IRLVPLRAAEDGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVVAKDVHGVAWNFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRGDGGDLHVGIRRAKRGFCGGGGGAEEASLPGWDQYGGLMRGNASPCAAAKGRGKVRAEDLVEAARLANGGQPFEVVYYPRASTPEFCV 296
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 5.859e-32 Identity = 84/187 (44.92%), Postives = 107/187 (57.22%), Query Frame = 3 Query: 90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ-GNVP---------------SSVI---SSHSMHL---------------GVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548 SF KTLT SD + GGFSV R A+ P LD + +PP Q + AKD+HG+ W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA R GN P SS++ S+S+ V+ A A+S G F V Y PR S SEF V Sbjct: 119 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYSAGWNPIGGSCGYSSLLREDESNSLRRSNCSLADRKGKVTAESVIEAATLAIS-GRPFEVVYYPRASTSEFCV 304
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3) HSP 1 Score: 133.65 bits (335), Expect = 6.478e-31 Identity = 77/182 (42.31%), Postives = 97/182 (53.30%), Query Frame = 3 Query: 90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPS-----SVISSHSMHLGVL------------------------ATAWHAVSTGTMFTVYYKPRTSPSEFIV 548 SF KTLT SD + GGFSV R A+ P LD S +PP Q + AKD+HG EW FRHI+RG PRRHLL +GWS FV+ K+L AGD+ +F+R E G + VG+RRA R ++ S I + G++ TA +TG F V Y PR S EF V Sbjct: 124 SFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCV 305
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 6.478e-31 Identity = 77/182 (42.31%), Postives = 97/182 (53.30%), Query Frame = 3 Query: 90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPS-----SVISSHSMHLGVL------------------------ATAWHAVSTGTMFTVYYKPRTSPSEFIV 548 SF KTLT SD + GGFSV R A+ P LD S +PP Q + AKD+HG EW FRHI+RG PRRHLL +GWS FV+ K+L AGD+ +F+R E G + VG+RRA R ++ S I + G++ TA +TG F V Y PR S EF V Sbjct: 124 SFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYRGTPRRHLLTTGWSPFVNKKQLTAGDSIVFMRDEGGNIHVGLRRAKRGFCSIGGDDESLSSIPGWDQYRGLMRRNATATATGGRTPPKGKVPPENVLTAATRATTGQPFEVLYYPRASTPEFCV 305
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1) HSP 1 Score: 132.494 bits (332), Expect = 1.443e-30 Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 3 Query: 90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMR 404 SF KTLT SD + GGFSV R A+ P LD S PP Q + AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +F+R ENG+L VG+RRA + Sbjct: 127 SFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKK 231 The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bpback to top |