CX675416
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.885e-30 Identity = 77/187 (41.18%), Postives = 98/187 (52.41%), Query Frame = 3 Query: 90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ---------GNVP---------------SSVISSH----------SMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548 SF KTLT SD + GGFSV R A+ P LD PP Q + AKD+HG W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR +GEL VG+RRA R N P S ++ H + + + A S+G F V Y PR S +F+V Sbjct: 127 SFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRTRHGELCVGIRRAKRMACGGMECMSGWNAPGYGGGGFSAFLKEEESKLMKGHGGGGYMKGKGKVRMADVVEAASLASSGQPFEVAYYPRASTPDFVV 313
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2) HSP 1 Score: 129.028 bits (323), Expect = 1.596e-29 Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVR 392 +TL+P++ Q E E R V+SF K LTASDTS G FSV +HA ECLPPLDMS+ P QEL A DLHGN+WRF+H +R PR +GW+ F +SK+LV GD +F RGE GELRVG+R Sbjct: 100 ITLMPDTTQVVIPTENENQF----RPIVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 2.157e-26 Identity = 67/157 (42.68%), Postives = 86/157 (54.78%), Query Frame = 3 Query: 93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL----RGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 551 + K LT SD + GGFSV R AD P L++ PP Q L DL G+ W FRHI+RG PRRHLL +GWS FV++K+LVAGD +F+ +L VGVRRA R G S+ + + + A + F V Y PR EF+VP Sbjct: 128 YAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAPAPERKLLVGVRRAARYSGE--SACNARGRVQPQEVMEAVRLAAEQAAFRVTYYPRHGAGEFVVP 282
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 3.114e-25 Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 3 Query: 84 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRR 395 V +F K LT SD + GGFSV R AD P L+ PP Q+L D+HG W FRHI+RG PRRHLL +GWS FV+SK+L+AGD+ +F+R E+ +GVRR Sbjct: 116 VTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRR 219
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFT_ORYSJ (Putative auxin response factor 20 OS=Oryza sativa subsp. japonica GN=ARF20 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14 Identity = 63/202 (31.19%), Postives = 97/202 (48.02%), Query Frame = 3 Query: 3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLL-------QSGWSVFVSSKRLVAGDAFIFLR------GENGELRVGVRRAMRQQ-GNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYM 566 ++LLP S+ D A ++ F F K L+ +D +++ VL A+ LPPLD++ + +DL G + F HI+ + R++L GW FV +KRL D +F+R +GEL VGVRRA R + G+ P + + V++ W A+ T F V Y PR EF+V D+Y+ Sbjct: 93 ISLLPGSHDDTTA-RRQVPAHGEPGFRF--FEKQLSPADVTSNA--LVLPAGAEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIWDKKRCRYMLGDLGVNDNDGWRGFVKAKRLATRDTVVFMRRGGGDGDGDGELLVGVRRAPRARGGHHPRPGVEDNK----VVSEVWLAMQGVTPFEVTYYPREGTFEFVVSRDEYI 285 HSP 2 Score: 69.3218 bits (168), Expect = 1.500e-11 Identity = 55/163 (33.74%), Postives = 75/163 (46.01%), Query Frame = 3 Query: 93 FCKTLTASDTSTHGG-----FSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRG-----QPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGE-NGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548 F K L+ SD + +GG F + + A E + P R P +L +L G W F H + + H L +GWS FV +KRL GD IF+R GE VGVRR + G +P + H +A AW S+ F V Y P +EF+V Sbjct: 436 FDKKLSPSDAAANGGGSGALFVIPKPSAAEHVLP----RIP---DLRVTNLQGGRWEFGHTWSDADTDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMRRRPGGEPLVGVRR--KPHGGMPVGIPDKH------VADAWLDASSAQPFRVTYCPWQGTAEFVV 583
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: Y7833_ORYSJ (B3 domain-containing protein Os07g0183300/Os07g0183600 OS=Oryza sativa subsp. japonica GN=Os07g0183300/Os07g0183600 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11 Identity = 53/157 (33.76%), Postives = 75/157 (47.77%), Query Frame = 3 Query: 90 SFCKTLTASDT-STHGGFSVLRRH-ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRG-ENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 551 SF K LT +D F V +R A LP L ++ P L KD+HG EW + ++ H+L SGW F ++ RLV GD +F+R ++GE +G+RR ++ + P SV V+ W A F V Y R EF+VP Sbjct: 441 SFVKPLTCTDAVKNRYRFIVPKRETAMGVLPQLQLNEHVP---LYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSMDSGERYMGLRRTLKPE---PVSVDE-------VIEAVWRAARL-EPFEVTYLSRQDGDEFVVP 581 The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bpback to top |