CX675416

Overview
NameCX675416
Unique NameCX675416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10991 contig Csv1_Contig10991:648..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.885e-30
Identity = 77/187 (41.18%), Postives = 98/187 (52.41%), Query Frame = 3
Query:   90 SFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQ---------GNVP---------------SSVISSH----------SMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548
            SF KTLT SD +  GGFSV R  A+   P LD    PP Q + AKD+HG  W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR  +GEL VG+RRA R            N P               S ++  H           + +  +  A    S+G  F V Y PR S  +F+V
Sbjct:  127 SFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRTRHGELCVGIRRAKRMACGGMECMSGWNAPGYGGGGFSAFLKEEESKLMKGHGGGGYMKGKGKVRMADVVEAASLASSGQPFEVAYYPRASTPDFVV 313          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFW_ARATH (Putative auxin response factor 23 OS=Arabidopsis thaliana GN=ARF23 PE=5 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.596e-29
Identity = 70/130 (53.85%), Postives = 86/130 (66.15%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVR 392
            +TL+P++ Q     E E       R  V+SF K LTASDTS  G FSV  +HA ECLPPLDMS+  P QEL A DLHGN+WRF+H +R  PR     +GW+ F +SK+LV GD  +F RGE GELRVG+R
Sbjct:  100 ITLMPDTTQVVIPTENENQF----RPIVNSFTKVLTASDTSAQGEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNAFTTSKKLVVGDVIVFARGETGELRVGIR 222          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.157e-26
Identity = 67/157 (42.68%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL----RGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 551
            + K LT SD +  GGFSV R  AD   P L++   PP Q L   DL G+ W FRHI+RG PRRHLL +GWS FV++K+LVAGD  +F+         +L VGVRRA R  G   S+  +   +    +  A    +    F V Y PR    EF+VP
Sbjct:  128 YAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAPAPERKLLVGVRRAARYSGE--SACNARGRVQPQEVMEAVRLAAEQAAFRVTYYPRHGAGEFVVP 282          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.114e-25
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 3
Query:   84 VHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRR 395
            V +F K LT SD +  GGFSV R  AD   P L+    PP Q+L   D+HG  W FRHI+RG PRRHLL +GWS FV+SK+L+AGD+ +F+R    E+ +GVRR
Sbjct:  116 VTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADEMFIGVRR 219          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: ARFT_ORYSJ (Putative auxin response factor 20 OS=Oryza sativa subsp. japonica GN=ARF20 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.110e-14
Identity = 63/202 (31.19%), Postives = 97/202 (48.02%), Query Frame = 3
Query:    3 VTLLPESNQDENAVEKEXXXXXXXRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLL-------QSGWSVFVSSKRLVAGDAFIFLR------GENGELRVGVRRAMRQQ-GNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVPYDQYM 566
            ++LLP S+ D  A  ++        F    F K L+ +D +++    VL   A+  LPPLD++     +    +DL G  + F HI+  +  R++L         GW  FV +KRL   D  +F+R        +GEL VGVRRA R + G+ P   +  +     V++  W A+   T F V Y PR    EF+V  D+Y+
Sbjct:   93 ISLLPGSHDDTTA-RRQVPAHGEPGFRF--FEKQLSPADVTSNA--LVLPAGAEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIWDKKRCRYMLGDLGVNDNDGWRGFVKAKRLATRDTVVFMRRGGGDGDGDGELLVGVRRAPRARGGHHPRPGVEDNK----VVSEVWLAMQGVTPFEVTYYPREGTFEFVVSRDEYI 285          

HSP 2 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 55/163 (33.74%), Postives = 75/163 (46.01%), Query Frame = 3
Query:   93 FCKTLTASDTSTHGG-----FSVLRRHADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRG-----QPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGE-NGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIV 548
            F K L+ SD + +GG     F + +  A E + P    R P   +L   +L G  W F H +       +   H L +GWS FV +KRL  GD  IF+R    GE  VGVRR  +  G +P  +   H      +A AW   S+   F V Y P    +EF+V
Sbjct:  436 FDKKLSPSDAAANGGGSGALFVIPKPSAAEHVLP----RIP---DLRVTNLQGGRWEFGHTWSDADTDRRSSSHTLAAGWSAFVKAKRLCVGDTVIFMRRRPGGEPLVGVRR--KPHGGMPVGIPDKH------VADAWLDASSAQPFRVTYCPWQGTAEFVV 583          
BLAST of CX675416 vs. ExPASy Swiss-Prot
Match: Y7833_ORYSJ (B3 domain-containing protein Os07g0183300/Os07g0183600 OS=Oryza sativa subsp. japonica GN=Os07g0183300/Os07g0183600 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.702e-11
Identity = 53/157 (33.76%), Postives = 75/157 (47.77%), Query Frame = 3
Query:   90 SFCKTLTASDT-STHGGFSVLRRH-ADECLPPLDMSRQPPTQELAAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRG-ENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVSTGTMFTVYYKPRTSPSEFIVP 551
            SF K LT +D       F V +R  A   LP L ++   P   L  KD+HG EW   + ++     H+L SGW  F ++ RLV GD  +F+R  ++GE  +G+RR ++ +   P SV         V+   W A      F V Y  R    EF+VP
Sbjct:  441 SFVKPLTCTDAVKNRYRFIVPKRETAMGVLPQLQLNEHVP---LYIKDMHGKEWVINYTWKEYT--HMLSSGWIKFANANRLVTGDNVVFMRSMDSGERYMGLRRTLKPE---PVSVDE-------VIEAVWRAARL-EPFEVTYLSRQDGDEFVVP 581          
The following BLAST results are available for this feature:
BLAST of CX675416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
ARFV_ORYSJ1.885e-3041.18Auxin response factor 22 OS=Oryza sativa subsp. ja... [more]
ARFW_ARATH1.596e-2953.85Putative auxin response factor 23 OS=Arabidopsis t... [more]
ARFM_ORYSJ2.157e-2642.68Auxin response factor 13 OS=Oryza sativa subsp. ja... [more]
ARFQ_ARATH3.114e-2552.88Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
ARFT_ORYSJ1.110e-1431.19Putative auxin response factor 20 OS=Oryza sativa ... [more]
Y7833_ORYSJ5.702e-1133.76B3 domain-containing protein Os07g0183300/Os07g018... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B02-D4-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675416 ID=CX675416; Name=CX675416; organism=Citrus sinensis; type=EST; length=574bp
AAGTGACTTTACTTCCAGAGTCAAACCAAGATGAGAACGCGGTGGAGAAA
GAACCACCTCCACCCCCGCCACCAAGATTTCACGTGCATTCGTTTTGTAA
AACACTAACGGCATCGGATACAAGTACTCATGGTGGGTTTTCGGTACTGA
GACGGCATGCTGATGAGTGTCTTCCACCCTTGGACATGTCACGGCAGCCT
CCCACACAGGAGTTGGCTGCTAAGGATTTGCATGGAAATGAGTGGCGGTT
CCGGCATATTTTCAGGGGTCAACCACGTAGACACTTGCTTCAGAGTGGAT
GGAGTGTTTTTGTTAGCTCAAAAAGACTAGTTGCAGGGGATGCTTTTATA
TTTTTGAGGGGTGAGAATGGCGAACTTCGTGTTGGTGTAAGGCGAGCAAT
GAGGCAGCAGGGTAATGTTCCATCTTCAGTCATATCTAGTCACAGCATGC
ATCTCGGTGTCCTTGCCACTGCATGGCATGCTGTCTCCACAGGAACTATG
TTCACTGTCTATTACAAGCCAAGAACAAGCCCATCAGAGTTCATTGTTCC
GTATGATCAGTACATGGAATCCAT
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