CX675415

Overview
NameCX675415
Unique NameCX675415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11749 contig Csv1_Contig11749:1127..1890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.567e-15
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = -3
Query:  496 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNSVSLSSKGEDSPMNGEGIDAKEVKQP 762
            L+ EL++LF  +G L   +K W I+YTD E DMM+VGDDPW +FC +V KI +YTKEEV   N  + S   E + +  E   +  V QP
Sbjct:  692 LLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVENANDDNKSCL-EQAALMMEASKSSSVSQP 779          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.463e-14
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = -3
Query:  589 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEE 762
            L ++L+++F+  G+L    K W +VYTDDE DMMLVGDDPW EFC MV++I+IY+ EE
Sbjct:  574 LRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEE 631          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.259e-14
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = -3
Query:  556 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKMNS-VSLSS 762
            LI EL++LF+  G+L A +  W I +T++E D MLVG+DPW EFC MV+KIFIY+KEEV  + S  SLSS
Sbjct:  537 LILELEKLFDLKGQLQA-RNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKSRKSLSS 605          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = -3
Query:  556 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM-NSVSLSS 762
            LI EL++LF+  G+L   +  W I +TD +G  MLVGDDPW EFC MV+KI IY+KEEV  + +S SLSS
Sbjct:  538 LILELEKLFDIKGQLQT-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKSSKSLSS 606          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = -3
Query:  556 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM-NSVSLSS 762
            LI EL++LF+  G+L   +  W I +TD +G  MLVGDDPW EFC MV+KI IY+KEEV  + +S SLSS
Sbjct:  522 LILELEKLFDLKGQLQT-RNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKSSKSLSS 590          
BLAST of CX675415 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.796e-12
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = -3
Query:  577 LIAELDQLFEFDGELMAHKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTKEEVLKM 762
            LI +L++LF+   EL   +  W IV+T++EG  MLVGDDPW EFC M ++IFI +KEE+ KM
Sbjct:  535 LIQKLEELFDLKDELRT-RNQWEIVFTNNEGAEMLVGDDPWPEFCNMAKRIFICSKEEIKKM 595          
The following BLAST results are available for this feature:
BLAST of CX675415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ARFD_ARATH6.567e-1546.07Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ1.463e-1456.90Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFN_ARATH3.259e-1457.14Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFU_ARATH2.112e-1355.71Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFT_ARATH2.112e-1355.71Auxin response factor 20 OS=Arabidopsis thaliana G... [more]
ARFM_ARATH6.796e-1253.23Auxin response factor 13 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62B02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62B02-D4-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675415 ID=CX675415; Name=CX675415; organism=Citrus sinensis; type=EST; length=764bp
TTTCACATAAACTAATAGATTCTACTATCTTGTGACTATTTTGCAAAGAC
TTACAAAGTCATTAGCCCTTACTACACCTGCTAAAAATCCTAGTGAATGG
AGATCCGCGAACAGAAAACCAACAAAACAAACATATGCTTGTAGGCTTTC
CCAAGAAGGCACCAGAGGATGTATAAAACTTAGGCTACTTACATTAAGAG
GTTGGAAAAGAGGGGTAAACAACTATGTACAAAAAGGGATCGTTCGGGAA
AGCAAAAGCTAGAATTGCCATGCTCAAAATAGGGGGTATACATATTGAAT
GTATTATATGAGTCGGACACAATATACCATGCCCCAAATTGGATAGTCAT
GCCGTCTACGAGGAGGATTGACATCCATCTATTAGTTCATAATCCAAAAT
AGAATGCCCTGAATATCTTCTTTCTGATGCTGCAACAAAACCTTGAACCA
TCAAAACCACACCTAAAAATTCTCTGCATTAGATGCTAAAGGAAGTGGCT
GTTTCACTTCTTTTGCATCAATGCCTTCCCCATTCATTGGACTATCCTCA
CCCTTCGAGCTTAAAGACACTGAGTTCATCTTCAGGACCTCCTCTTTTGT
GTAGATGAAAATTTTGCGTACCATACCACAAAACTCCTGCCATGGATCAT
CTCCNACAAGCATCATGTCACCCTCATCATCAGTATATACGATAAGCCAA
TTTTTCTTGTGAGCCATTAATTCACCATCAAATTCAAATAACTGATCCAG
TTCGGCAATCAATT
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