CX675409

Overview
NameCX675409
Unique NameCX675409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YD22B_YEAST (Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-DR2 PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 61/232 (26.29%), Postives = 96/232 (41.38%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGE 681
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V  +  +
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQNNQ 889          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YO21B_YEAST (Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-OR1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 61/226 (26.99%), Postives = 94/226 (41.59%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVV 663
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYV 883          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YL22B_YEAST (Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY2B-LR2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.361e-11
Identity = 61/226 (26.99%), Postives = 94/226 (41.59%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYPIKAT--RSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAVACAVYL--SYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVV 663
            +HTD+ GP         +YF+ F D+  R  WVY L  + E               + +  +    + +RG E+T+K   +F    GI    T     + +GV ER NRT+ N  R++L    LP   W  AV  +  +  S  SP      K  ++      L IT +  FG   I + H PD   SK+  +      +    NS GY +Y    ++ V + + V
Sbjct:  664 LHTDIFGPVHHLPKSAPSYFISFTDEKTRFQWVYPLHDRREESILNVFTSILAFIKNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDCRTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKND---KSARQHAGLAGLDITTILPFGQPVIVNNHNPD---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYV 883          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YA11B_YEAST (Transposon Ty1-A Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-A PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.027e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKLRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YP12B_YEAST (Transposon Ty1-PR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-PR1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YO12B_YEAST (Transposon Ty1-OR Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-OR PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YO11B_YEAST (Transposon Ty1-OL Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-OL PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YN12B_YEAST (Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-NL2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YN11B_YEAST (Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-NL1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
BLAST of CX675409 vs. ExPASy Swiss-Prot
Match: YM14B_YEAST (Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY1B-MR2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.260e-11
Identity = 63/244 (25.82%), Postives = 103/244 (42.21%), Query Frame = 1
Query:    4 IHTDVCGPFKLNSLGKNNYFLLFIDDFLRKTWVYFLKQKSEVXXXXXXXXXXXXXXSGYP--IKATRSNRGGEFTSKEFLEFCEANGIRRPLTVLRSPQQNGVVERKNRTIRNMARSMLKSKRLPKEFWAEAV--ACAVYLSYRSPSRSV*GKMPQEAWSGRKLGITHLRVFGS--IAHVHVPDESRSKLDDKSEKFIFIGYDNNSKGYKLYNSDNRRIVISRDVVFNEEGEWDFGSGMDDFYF 717
            +HTD+ GP         +YF+ F D+  +  WVY L  + E               + +   +   + +RG E+T++   +F E NGI    T     + +GV ER NRT+ +  R+ L+   LP   W  A+  +  V  S  SP      K  ++      L I+ L  FG   I + H P+   SK+  +      +    NS GY +Y    ++ V + + V  +  E    S +D F +
Sbjct:  668 LHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTIVRNSLASPKSK---KSARQHAGLAGLDISTLLPFGQPVIVNDHNPN---SKIHPRGIPGYALHPSRNSYGYIIYLPSLKKTVDTTNYVILQGKE----SRLDQFNY 901          
The following BLAST results are available for this feature:
BLAST of CX675409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
YD22B_YEAST1.808e-1126.29Transposon Ty2-DR2 Gag-Pol polyprotein OS=Saccharo... [more]
YO21B_YEAST2.361e-1126.99Transposon Ty2-OR1 Gag-Pol polyprotein OS=Saccharo... [more]
YL22B_YEAST2.361e-1126.99Transposon Ty2-LR2 Gag-Pol polyprotein OS=Saccharo... [more]
YA11B_YEAST4.027e-1125.82Transposon Ty1-A Gag-Pol polyprotein OS=Saccharomy... [more]
YP12B_YEAST5.260e-1125.82Transposon Ty1-PR1 Gag-Pol polyprotein OS=Saccharo... [more]
YO12B_YEAST5.260e-1125.82Transposon Ty1-OR Gag-Pol polyprotein OS=Saccharom... [more]
YO11B_YEAST5.260e-1125.82Transposon Ty1-OL Gag-Pol polyprotein OS=Saccharom... [more]
YN12B_YEAST5.260e-1125.82Transposon Ty1-NL2 Gag-Pol polyprotein OS=Saccharo... [more]
YN11B_YEAST5.260e-1125.82Transposon Ty1-NL1 Gag-Pol polyprotein OS=Saccharo... [more]
YM14B_YEAST5.260e-1125.82Transposon Ty1-MR2 Gag-Pol polyprotein OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_62A11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-62A11-B22-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675409 ID=CX675409; Name=CX675409; organism=Citrus sinensis; type=EST; length=726bp
CTCATTCATACTGATGTGTGCGGTCCATTCAAGCTAAACTCCCTTGGTAA
AAATAATTATTTCCTTCTCTTCATAGATGATTTTTTAAGAAAAACTTGGG
TGTATTTTTTAAAGCAGAAATCAGAAGTCTTTGAAGCTTTCAAGAAGTTT
AAAGCTGCAATGGAAAAAGAAAGTGGATACCCAATTAAAGCCACAAGATC
TAATCGAGGTGGAGAGTTCACTTCCAAAGAATTTTTAGAGTTTTGTGAAG
CAAATGGAATTCGACGCCCTTTGACAGTTCTAAGATCCCCTCAGCAAAAT
GGTGTTGTAGAAAGGAAGAACAGAACCATCCGCAACATGGCAAGAAGCAT
GCTCAAGAGTAAGAGGCTACCTAAAGAATTTTGGGCTGAAGCTGTTGCAT
GTGCAGTCTACTTATCCTATCGATCTCCATCAAGAAGCGTGTGAGGCAAG
ATGCCACAAGAAGCTTGGAGTGGAAGAAAACTCGGCATCACCCATCTTAG
AGTTTTCGGAAGCATTGCCCATGTACATGTACCGGACGAGAGTAGAAGCA
AACTGGATGATAAAAGTGAGAAGTTCATCTTCATCGGCTATGACAACAAC
TCCAAAGGATACAAACTTTACAATTCAGACAACAGGAGGATCGTGATCAG
TCGAGATGTAGTTTTTAATGAAGAAGGAGAATGGGATTTTGGCTCTGGTA
TGGATGACTTCTACTTCTTTCCCATT
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